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  5. Solyc10g080740.2.1

Solyc10g080740.2.1


Description : SMG7 Nonsense-Mediated mRNA Decay protein


Gene families : OG0002555 (Archaeplastida) Phylogenetic Tree(s): OG0002555_tree ,
OG_05_0002119 (LandPlants) Phylogenetic Tree(s): OG_05_0002119_tree ,
OG_06_0006148 (SeedPlants) Phylogenetic Tree(s): OG_06_0006148_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g080740.2.1
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
LOC_Os08g21350.1 No alias SMG7 Nonsense-Mediated mRNA Decay protein 0.02 Archaeplastida
MA_32980g0010 No alias Protein SMG7 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c11_18290V3.1 No alias Telomerase activating protein Est1 0.04 Archaeplastida
Pp3c7_5420V3.1 No alias Telomerase activating protein Est1 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
MF GO:0035091 phosphatidylinositol binding IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1902554 serine/threonine protein kinase complex IEP Neighborhood
CC GO:1902911 protein kinase complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
CC GO:1990316 Atg1/ULK1 kinase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019458 EST1 69 192
IPR018834 DNA/RNA-bd_Est1-type 206 541
No external refs found!