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  5. Solyc10g081180.2.1

Solyc10g081180.2.1


Description : RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000394 (LandPlants) Phylogenetic Tree(s): OG_05_0000394_tree ,
OG_06_0000412 (SeedPlants) Phylogenetic Tree(s): OG_06_0000412_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g081180.2.1
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251200 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00013p00256900 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AMTR_s00030p00132070 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00030p00198740 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.05 Archaeplastida
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.03 Archaeplastida
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.05 Archaeplastida
AT4G13850 GRP2, ATGRP2, GR-RBP2 glycine-rich RNA-binding protein 2 0.03 Archaeplastida
AT5G61030 GR-RBP3 glycine-rich RNA-binding protein 3 0.06 Archaeplastida
Cre02.g079400 No alias No description available 0.04 Archaeplastida
GSVIVT01021024001 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Gb_26296 No alias RNA editing factor (ORRM) 0.03 Archaeplastida
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
LOC_Os03g61990.3 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
LOC_Os07g08960.1 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida
LOC_Os12g31800.1 No alias RNA editing factor (ORRM) 0.03 Archaeplastida
MA_10428777g0010 No alias Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba... 0.03 Archaeplastida
MA_10436424g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.07 Archaeplastida
MA_77292g0010 No alias RNA editing factor (ORRM) 0.04 Archaeplastida
Mp4g15980.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Pp3c12_1830V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.05 Archaeplastida
Pp3c12_23410V3.1 No alias glycine-rich RNA-binding protein 3 0.04 Archaeplastida
Pp3c24_17170V3.1 No alias chloroplast RNA-binding protein 29 0.02 Archaeplastida
Pp3c7_3360V3.1 No alias cold, circadian rhythm, and RNA binding 1 0.03 Archaeplastida
Smo140819 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Solyc03g071560.4.1 No alias RNA chaperone (RZ1|GR-RBP) 0.06 Archaeplastida
Solyc10g047130.2.1 No alias RNA chaperone (RZ1|GR-RBP) 0.04 Archaeplastida
Zm00001e005260_P002 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida
Zm00001e006287_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.04 Archaeplastida
Zm00001e018330_P004 No alias RNA editing factor (ORRM) 0.03 Archaeplastida
Zm00001e028481_P002 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.04 Archaeplastida
Zm00001e033010_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009057 macromolecule catabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 42 112
No external refs found!