AMTR_s00031p00119810 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00031.52

Description : Putative pentatricopeptide repeat-containing protein At1g16830 OS=Arabidopsis thaliana


Gene families : OG0011510 (Archaeplastida) Phylogenetic Tree(s): OG0011510_tree ,
OG_05_0011402 (LandPlants) Phylogenetic Tree(s): OG_05_0011402_tree ,
OG_06_0011461 (SeedPlants) Phylogenetic Tree(s): OG_06_0011461_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00031p00119810
Cluster HCCA: Cluster_196

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01029542001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os10g42760.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Solyc01g080450.4.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e002488_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
CC GO:0000922 spindle pole IEP Neighborhood
MF GO:0003964 RNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004484 mRNA guanylyltransferase activity IEP Neighborhood
MF GO:0004721 phosphoprotein phosphatase activity IEP Neighborhood
MF GO:0004828 serine-tRNA ligase activity IEP Neighborhood
CC GO:0005815 microtubule organizing center IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006278 RNA-dependent DNA biosynthetic process IEP Neighborhood
BP GO:0006370 7-methylguanosine mRNA capping IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006434 seryl-tRNA aminoacylation IEP Neighborhood
BP GO:0006470 protein dephosphorylation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Neighborhood
MF GO:0008192 RNA guanylyltransferase activity IEP Neighborhood
BP GO:0009452 7-methylguanosine RNA capping IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036260 RNA capping IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0070568 guanylyltransferase activity IEP Neighborhood
BP GO:0071897 DNA biosynthetic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 594 640
IPR002885 Pentatricopeptide_repeat 418 465
IPR002885 Pentatricopeptide_repeat 522 570
IPR002885 Pentatricopeptide_repeat 349 395
IPR002885 Pentatricopeptide_repeat 311 343
IPR002885 Pentatricopeptide_repeat 491 513
IPR002885 Pentatricopeptide_repeat 248 276
IPR002885 Pentatricopeptide_repeat 213 242
No external refs found!