1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc10g083150.3.1

Solyc10g083150.3.1


Description : component MPE1 of Cleavage and Polyadenylation Specificity Factor (CPSF) complex


Gene families : OG0001557 (Archaeplastida) Phylogenetic Tree(s): OG0001557_tree ,
OG_05_0004108 (LandPlants) Phylogenetic Tree(s): OG_05_0004108_tree ,
OG_06_0006606 (SeedPlants) Phylogenetic Tree(s): OG_06_0006606_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g083150.3.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
Cre12.g543303 No alias No description available 0.01 Archaeplastida
GSVIVT01035456001 No alias E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana 0.04 Archaeplastida
MA_401121g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
Pp3c1_38750V3.1 No alias DWNN domain, a CCHC-type zinc finger 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR025829 Zn_knuckle_CX2CX3GHX4C 217 237
IPR014891 DWNN_domain 3 76
No external refs found!