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  5. Solyc10g083200.2.1

Solyc10g083200.2.1


Description : no hits & (original description: none)


Gene families : OG0005181 (Archaeplastida) Phylogenetic Tree(s): OG0005181_tree ,
OG_05_0005731 (LandPlants) Phylogenetic Tree(s): OG_05_0005731_tree ,
OG_06_0006045 (SeedPlants) Phylogenetic Tree(s): OG_06_0006045_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc10g083200.2.1
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00241450 evm_27.TU.AmTr_v1... No description available 0.06 Archaeplastida
AMTR_s00089p00089760 evm_27.TU.AmTr_v1... No description available 0.05 Archaeplastida
AT4G31200 No alias SWAP (Suppressor-of-White-APricot)/surp RNA-binding... 0.08 Archaeplastida
Cre04.g222300 No alias No description available 0.04 Archaeplastida
GSVIVT01014608001 No alias No description available 0.07 Archaeplastida
GSVIVT01029743001 No alias No description available 0.05 Archaeplastida
Gb_16843 No alias no hits & (original description: none) 0.06 Archaeplastida
LOC_Os06g46880.1 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_73776g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo413256 No alias No description available 0.02 Archaeplastida
Zm00001e030300_P002 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006354 DNA-templated transcription, elongation IEP Neighborhood
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
CC GO:0016593 Cdc73/Paf1 complex IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR006903 RNA_pol_II-bd 316 385
IPR000061 Surp 127 172
No external refs found!