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  4. Sequence
  5. Solyc11g005120.3.1

Solyc11g005120.3.1


Description : no hits & (original description: none)


Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0000008 (LandPlants) Phylogenetic Tree(s): OG_05_0000008_tree ,
OG_06_0000013 (SeedPlants) Phylogenetic Tree(s): OG_06_0000013_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005120.3.1
Cluster HCCA: Cluster_70

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00218870 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00001p00270400 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00013p00103080 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 Archaeplastida
AMTR_s00047p00181740 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
AMTR_s00071p00193200 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00089p00081270 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
AT1G24260 AGL9, SEP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.03 Archaeplastida
AT2G42830 SHP2, AGL5 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT2G45650 AGL6 AGAMOUS-like 6 0.03 Archaeplastida
AT3G02310 AGL4, SEP2 K-box region and MADS-box transcription factor family protein 0.04 Archaeplastida
AT3G54340 AP3, ATAP3 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT3G58780 AGL1, SHP1 K-box region and MADS-box transcription factor family protein 0.07 Archaeplastida
AT3G61120 AGL13 AGAMOUS-like 13 0.02 Archaeplastida
AT4G09960 STK, AGL11 K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT4G18960 AG K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
AT5G15800 AGL2, SEP1 K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G20240 PI K-box region and MADS-box transcription factor family protein 0.03 Archaeplastida
AT5G23260 AGL32, TT16, ABS K-box region and MADS-box transcription factor family protein 0.05 Archaeplastida
GSVIVT01008139001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01008560001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01008806001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.07 Archaeplastida
GSVIVT01009815001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01010521001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01012110001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01012250001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01018450001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01025945001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01026207001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01027577001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 Archaeplastida
GSVIVT01035477001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.05 Archaeplastida
GSVIVT01036549001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Gb_03068 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os01g10504.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
LOC_Os01g66290.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os02g07430.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os02g45770.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os03g11614.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os05g11414.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g11970.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os09g32948.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os12g10540.3 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_10434339g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.03 Archaeplastida
MA_16629g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_175522g0010 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
MA_18048g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_333471g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_629987g0010 No alias MADS-box protein GGM13 OS=Gnetum gnemon... 0.03 Archaeplastida
MA_78010g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_9841429g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Pp3c25_6940V3.1 No alias AGAMOUS-like 62 0.02 Archaeplastida
Pp3c9_1370V3.1 No alias AGAMOUS-like 66 0.02 Archaeplastida
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
Solyc01g106710.1.1 No alias component MED19 of head module of MEDIATOR transcription... 0.03 Archaeplastida
Solyc02g065730.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e003667_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e013738_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e015728_P001 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Zm00001e016529_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e030373_P001 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e031267_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!