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  5. Solyc11g005150.3.1

Solyc11g005150.3.1


Description : LRR-domain extensin


Gene families : OG0000279 (Archaeplastida) Phylogenetic Tree(s): OG0000279_tree ,
OG_05_0000206 (LandPlants) Phylogenetic Tree(s): OG_05_0000206_tree ,
OG_06_0000158 (SeedPlants) Phylogenetic Tree(s): OG_06_0000158_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005150.3.1
Cluster HCCA: Cluster_154

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00271610 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.hydroxyproline-rich... 0.02 Archaeplastida
AT4G13340 No alias Leucine-rich repeat (LRR) family protein 0.02 Archaeplastida
Gb_12380 No alias LRR-domain extensin 0.02 Archaeplastida
LOC_Os01g41120.1 No alias LRR-domain extensin 0.02 Archaeplastida
Zm00001e013618_P001 No alias LRR-domain extensin 0.03 Archaeplastida
Zm00001e020600_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e041184_P001 No alias Uncharacterized protein At4g06744 OS=Arabidopsis... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005199 structural constituent of cell wall IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 203 260
IPR001611 Leu-rich_rpt 64 119
No external refs found!