Solyc11g005250.3.1

Description : chromatin remodeling factor (SHPRH)

Gene families : OG0004869 (Archaeplastida) Phylogenetic Tree(s): OG0004869_tree ,
OG_05_0005737 (LandPlants) Phylogenetic Tree(s): OG_05_0005737_tree ,
OG_06_0007448 (SeedPlants) Phylogenetic Tree(s): OG_06_0007448_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g005250.3.1
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00063p00087160	evm_27.TU.AmTr_v1...	F-box protein At3g54460 OS=Arabidopsis thaliana	0.02	Archaeplastida
AMTR_s00063p00087380	evm_27.TU.AmTr_v1...	Chromatin organisation.chromatin remodeling...	0.05	Archaeplastida
Cre07.g340100	No alias	No description available	0.01	Archaeplastida
GSVIVT01013494001	No alias	Chromatin organisation.chromatin remodeling...	0.07	Archaeplastida
LOC_Os01g72310.1	No alias	chromatin remodeling factor (SHPRH)	0.02	Archaeplastida
MA_64225g0010	No alias	chromatin remodeling factor (SHPRH)	0.03	Archaeplastida
Pp3c16_14340V3.1	No alias	SNF2 domain-containing protein / helicase...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0008144	drug binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
MF	GO:0044877	protein-containing complex binding	IEP	Neighborhood
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011124	Znf_CW	548	590
IPR000330	SNF2_N	288	941
IPR001650	Helicase_C	1169	1266

External Links

No external refs found!