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  5. Solyc11g005300.2.1

Solyc11g005300.2.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0008073 (SeedPlants) Phylogenetic Tree(s): OG_06_0008073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g005300.2.1
Cluster HCCA: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00032810 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00077p00070720 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G15100 RHA2A RING-H2 finger A2A 0.04 Archaeplastida
AT1G24580 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G53010 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G17450 RHA3A RING-H2 finger A3A 0.04 Archaeplastida
AT3G10910 No alias RING/U-box superfamily protein 0.11 Archaeplastida
AT3G18773 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT4G11360 RHA1B RING-H2 finger A1B 0.03 Archaeplastida
AT4G30370 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G41400 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT5G42200 No alias RING/U-box superfamily protein 0.02 Archaeplastida
GSVIVT01009096001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01012022001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01019585001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01027769001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_03946 No alias no hits & (original description: none) 0.03 Archaeplastida
Gb_08038 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_32878 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_35043 No alias NEP1-interacting protein 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g61470.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g15110.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os03g28080.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os04g49000.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os05g29676.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os05g39260.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g07100.2 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os09g36500.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os10g39450.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os11g02424.1 No alias RING-H2 finger protein ATL74 OS=Arabidopsis thaliana... 0.05 Archaeplastida
LOC_Os12g02210.1 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10426834g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_10434759g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_117647g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_1623327g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_167410g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_201391g0010 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.03 Archaeplastida
MA_211g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_214717g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_31462g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_3929631g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_402876g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_43543g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_46635g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_611616g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_6931619g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_69343g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_711804g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_754688g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_77628g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Mp4g15970.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Mp6g19130.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Pp3c22_17730V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Smo412606 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Smo441685 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Solyc02g067680.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc02g083660.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc08g082680.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc11g005280.1.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Solyc11g005320.1.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Solyc11g007530.2.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e008560_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023515_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e027277_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e034025_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0005375 copper ion transmembrane transporter activity IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
BP GO:0035434 copper ion transmembrane transport IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
MF GO:0046915 transition metal ion transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 138 181
No external refs found!