- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
Solyc11g006710.2.1 details Solyc11g006710.2.1
Description : cationic amino acid transporter (CAT)
Gene families : OG0000547 (Archaeplastida) Phylogenetic Tree(s): OG0000547_tree ,
OG_05_0002054 (LandPlants) Phylogenetic Tree(s): OG_05_0002054_tree ,
OG_06_0001934 (SeedPlants) Phylogenetic Tree(s): OG_06_0001934_treeExpression Profile
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Co-expression Networks
Type Description Actions Neighborhood HRR: Solyc11g006710.2.1 Cluster HCCA: Cluster_97
Expression Context Conservation (ECC)
Target Alias Description ECC score Gene Family Method Actions Gb_27328 No alias cationic amino acid transporter (CAT) 0.04 Archaeplastida LOC_Os11g05690.2 No alias cationic amino acid transporter (CAT) 0.04 Archaeplastida LOC_Os12g06060.1 No alias cationic amino acid transporter (CAT) 0.05 Archaeplastida MA_10433254g0010 No alias Cationic amino acid transporter 1 OS=Arabidopsis... 0.04 Archaeplastida Pp3c5_24930V3.1 No alias cationic amino acid transporter 6 0.02 Archaeplastida Zm00001e005030_P001 No alias cationic amino acid transporter (CAT) 0.03 Archaeplastida Zm00001e039396_P004 No alias cationic amino acid transporter (CAT) 0.06 Archaeplastida
Functional Annotation
Type GO Term Name Evidence Source CC GO:0016020 membrane IEA Interproscan MF GO:0022857 transmembrane transporter activity IEA Interproscan BP GO:0055085 transmembrane transport IEA Interproscan Type GO Term Name Evidence Source BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood BP GO:0006820 anion transport IEP Neighborhood BP GO:0006835 dicarboxylic acid transport IEP Neighborhood BP GO:0009733 response to auxin IEP Neighborhood BP GO:0009889 regulation of biosynthetic process IEP Neighborhood BP GO:0010468 regulation of gene expression IEP Neighborhood BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood BP GO:0015711 organic anion transport IEP Neighborhood BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood BP GO:0015743 malate transport IEP Neighborhood BP GO:0015849 organic acid transport IEP Neighborhood BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood BP GO:0019222 regulation of metabolic process IEP Neighborhood BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood BP GO:0046942 carboxylic acid transport IEP Neighborhood BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood MF GO:0051540 metal cluster binding IEP Neighborhood BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood BP GO:0080090 regulation of primary metabolic process IEP Neighborhood BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood External LinksNo external refs found!