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  5. Solyc11g006940.3.1

Solyc11g006940.3.1


Description : component Sm-G of U1/U2/U4/U5-associated Sm accessory ribonucleoprotein complex


Gene families : OG0005064 (Archaeplastida) Phylogenetic Tree(s): OG0005064_tree ,
OG_05_0005093 (LandPlants) Phylogenetic Tree(s): OG_05_0005093_tree ,
OG_06_0003390 (SeedPlants) Phylogenetic Tree(s): OG_06_0003390_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g006940.3.1
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AT3G51320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.05 Archaeplastida
GSVIVT01029336001 No alias Pentatricopeptide repeat-containing protein At1g74630... 0.04 Archaeplastida
LOC_Os01g65840.1 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.03 Archaeplastida
LOC_Os02g41560.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.04 Archaeplastida
LOC_Os04g33840.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
LOC_Os05g01635.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.04 Archaeplastida
MA_29579g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
Zm00001e008183_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Zm00001e019067_P001 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 374 421
IPR002885 Pentatricopeptide_repeat 76 125
IPR002885 Pentatricopeptide_repeat 272 309
IPR002885 Pentatricopeptide_repeat 241 266
IPR001163 LSM_dom_euk/arc 553 602
IPR002885 Pentatricopeptide_repeat 181 211
IPR002885 Pentatricopeptide_repeat 449 473
IPR002885 Pentatricopeptide_repeat 153 175
No external refs found!