Solyc11g007580.3.1


Description : methylcytosine-specific DNA glycosylase (ROS1)


Gene families : OG0001102 (Archaeplastida) Phylogenetic Tree(s): OG0001102_tree ,
OG_05_0001721 (LandPlants) Phylogenetic Tree(s): OG_05_0001721_tree ,
OG_06_0001624 (SeedPlants) Phylogenetic Tree(s): OG_06_0001624_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g007580.3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00215000 evm_27.TU.AmTr_v1... DNA damage response.DNA repair mechanisms.base excision... 0.02 Archaeplastida
Gb_09301 No alias methylcytosine-specific DNA glycosylase (ROS1) 0.05 Archaeplastida
Gb_25446 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.03 Archaeplastida
Solyc09g009080.4.1 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.04 Archaeplastida
Zm00001e031766_P003 No alias methylcytosine-specific DNA glycosylase (ROS1).... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0004435 phosphatidylinositol phospholipase C activity IEP Neighborhood
MF GO:0004620 phospholipase activity IEP Neighborhood
MF GO:0004629 phospholipase C activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0007165 signal transduction IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
MF GO:0042578 phosphoric ester hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR028924 Perm-CXXC 1700 1731
IPR028925 RRM_DME 1734 1834
No external refs found!