Solyc11g007920.1.1

Description : histone (H2B)

Gene families : OG0000186 (Archaeplastida) Phylogenetic Tree(s): OG0000186_tree ,
OG_05_0000249 (LandPlants) Phylogenetic Tree(s): OG_05_0000249_tree ,
OG_06_0000187 (SeedPlants) Phylogenetic Tree(s): OG_06_0000187_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g007920.1.1
Cluster	HCCA: Cluster_120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00012p00085300	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2B-type histone	0.06	Archaeplastida
AMTR_s00012p00085960	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2B-type histone	0.06	Archaeplastida
AMTR_s00012p00088340	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H2B-type histone	0.05	Archaeplastida
AT1G07790	HTB1	Histone superfamily protein	0.06	Archaeplastida
AT3G45980	HTB9, H2B	Histone superfamily protein	0.07	Archaeplastida
AT3G46030	HTB11	Histone superfamily protein	0.12	Archaeplastida
AT5G22880	HTB2, H2B	histone B2	0.06	Archaeplastida
AT5G59910	HTB4	Histone superfamily protein	0.08	Archaeplastida
Cpa\|evm.model.tig00000944.18	No alias	Chromatin organisation.histones.H2B-type histone	0.02	Archaeplastida
Cre06.g264800	No alias	Chromatin organisation.histones.H2B-type histone	0.04	Archaeplastida
Cre06.g264900	No alias	Chromatin organisation.histones.H2B-type histone	0.15	Archaeplastida
Cre06.g265400	No alias	Chromatin organisation.histones.H2B-type histone	0.02	Archaeplastida
Cre06.g266750	No alias	Chromatin organisation.histones.H2B-type histone	0.04	Archaeplastida
Cre06.g268100	No alias	Chromatin organisation.histones.H2B-type histone	0.01	Archaeplastida
Cre06.g268250	No alias	Chromatin organisation.histones.H2B-type histone	0.01	Archaeplastida
Cre06.g271376	No alias	Chromatin organisation.histones.H2B-type histone	0.11	Archaeplastida
Cre06.g273850	No alias	Chromatin organisation.histones.H2B-type histone	0.06	Archaeplastida
Cre06.g274250	No alias	Chromatin organisation.histones.H2B-type histone	0.1	Archaeplastida
Cre06.g274750	No alias	Chromatin organisation.histones.H2B-type histone	0.02	Archaeplastida
Cre06.g275800	No alias	Chromatin organisation.histones.H2B-type histone	0.07	Archaeplastida
Cre06.g276550	No alias	Chromatin organisation.histones.H2B-type histone	0.16	Archaeplastida
Cre06.g276900	No alias	Chromatin organisation.histones.H2B-type histone	0.05	Archaeplastida
Cre12.g504550	No alias	Chromatin organisation.histones.H2B-type histone	0.04	Archaeplastida
Cre12.g504700	No alias	Chromatin organisation.histones.H2B-type histone	0.11	Archaeplastida
Cre12.g505600	No alias	Chromatin organisation.histones.H2B-type histone	0.05	Archaeplastida
Cre12.g506200	No alias	Chromatin organisation.histones.H2B-type histone	0.11	Archaeplastida
Cre13.g570050	No alias	Chromatin organisation.histones.H2B-type histone	0.17	Archaeplastida
Cre17.g709150	No alias	Chromatin organisation.histones.H2B-type histone	0.15	Archaeplastida
Cre17.g710450	No alias	Chromatin organisation.histones.H2B-type histone	0.16	Archaeplastida
Cre17.g711750	No alias	Chromatin organisation.histones.H2B-type histone	0.15	Archaeplastida
Cre17.g713450	No alias	Chromatin organisation.histones.H2B-type histone	0.14	Archaeplastida
Cre17.g714050	No alias	Chromatin organisation.histones.H2B-type histone	0.14	Archaeplastida
GSVIVT01016164001	No alias	Chromatin organisation.histones.H2B-type histone	0.1	Archaeplastida
GSVIVT01025021001	No alias	Chromatin organisation.histones.H2B-type histone	0.1	Archaeplastida
GSVIVT01025025001	No alias	Chromatin organisation.histones.H2B-type histone	0.12	Archaeplastida
Gb_02245	No alias	histone (H2B)	0.09	Archaeplastida
Gb_07112	No alias	histone (H2B)	0.05	Archaeplastida
Gb_12082	No alias	histone (H2B)	0.08	Archaeplastida
Gb_12096	No alias	histone (H2B)	0.07	Archaeplastida
Gb_25549	No alias	histone (H2B)	0.04	Archaeplastida
Gb_26315	No alias	histone (H2B)	0.11	Archaeplastida
Gb_32754	No alias	histone (H2B)	0.1	Archaeplastida
LOC_Os01g05610.1	No alias	histone (H2B)	0.04	Archaeplastida
LOC_Os01g05630.1	No alias	histone (H2B)	0.04	Archaeplastida
LOC_Os01g05900.1	No alias	histone (H2B)	0.1	Archaeplastida
LOC_Os01g05970.1	No alias	histone (H2B)	0.06	Archaeplastida
LOC_Os01g06010.1	No alias	histone (H2B)	0.11	Archaeplastida
LOC_Os01g62230.1	No alias	histone (H2B)	0.04	Archaeplastida
LOC_Os03g17084.1	No alias	histone (H2B)	0.17	Archaeplastida
LOC_Os05g49860.1	No alias	histone (H2B)	0.12	Archaeplastida
LOC_Os08g38300.1	No alias	histone (H2B)	0.12	Archaeplastida
MA_10428006g0010	No alias	histone (H2B)	0.05	Archaeplastida
MA_10435143g0010	No alias	histone (H2B)	0.11	Archaeplastida
MA_10435143g0020	No alias	histone (H2B)	0.04	Archaeplastida
MA_10436516g0010	No alias	histone (H2B)	0.03	Archaeplastida
MA_10436516g0020	No alias	histone (H2B)	0.08	Archaeplastida
MA_38565g0010	No alias	histone (H2B)	0.04	Archaeplastida
MA_454575g0010	No alias	histone (H2B)	0.03	Archaeplastida
MA_6078786g0010	No alias	histone (H2B)	0.06	Archaeplastida
MA_77198g0010	No alias	histone (H2B)	0.03	Archaeplastida
MA_8065g0010	No alias	histone (H2B)	0.07	Archaeplastida
MA_9293473g0010	No alias	histone (H2B)	0.07	Archaeplastida
Mp4g13450.1	No alias	histone (H2B)	0.05	Archaeplastida
Mp6g04070.1	No alias	histone (H2B)	0.11	Archaeplastida
Mp6g07010.1	No alias	histone (H2B)	0.02	Archaeplastida
Pp3c12_7610V3.1	No alias	Histone superfamily protein	0.11	Archaeplastida
Pp3c13_23540V3.1	No alias	Histone superfamily protein	0.04	Archaeplastida
Pp3c14_21050V3.1	No alias	Histone superfamily protein	0.05	Archaeplastida
Pp3c17_15780V3.1	No alias	Histone superfamily protein	0.03	Archaeplastida
Pp3c6_27740V3.1	No alias	Histone superfamily protein	0.03	Archaeplastida
Smo182308	No alias	Chromatin organisation.histones.H2B-type histone	0.03	Archaeplastida
Zm00001e004028_P001	No alias	histone (H2B)	0.11	Archaeplastida
Zm00001e009857_P001	No alias	histone (H2B)	0.07	Archaeplastida
Zm00001e010906_P002	No alias	histone (H2B)	0.08	Archaeplastida
Zm00001e016882_P001	No alias	histone (H2B)	0.12	Archaeplastida
Zm00001e019346_P001	No alias	histone (H2B)	0.11	Archaeplastida
Zm00001e020484_P002	No alias	histone (H2B)	0.16	Archaeplastida
Zm00001e022201_P001	No alias	histone (H2B)	0.1	Archaeplastida
Zm00001e023342_P001	No alias	histone (H2B)	0.14	Archaeplastida
Zm00001e027803_P001	No alias	histone (H2B)	0.14	Archaeplastida
Zm00001e028779_P003	No alias	histone (H2B)	0.1	Archaeplastida
Zm00001e034226_P001	No alias	histone (H2B)	0.12	Archaeplastida
Zm00001e038466_P001	No alias	histone (H2B)	0.22	Archaeplastida
Zm00001e039057_P002	No alias	histone (H2B)	0.06	Archaeplastida
Zm00001e041296_P001	No alias	histone (H2B)	0.08	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006351	transcription, DNA-templated	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
BP	GO:0032774	RNA biosynthetic process	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
BP	GO:0097659	nucleic acid-templated transcription	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	5	120

External Links

No external refs found!

Solyc11g007920.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation