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  5. Solyc11g008210.3.1

Solyc11g008210.3.1


Description : Glycine-rich RNA-binding protein RZ1B OS=Arabidopsis thaliana (sp|o22703|rz1b_arath : 117.0)


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0000481 (LandPlants) Phylogenetic Tree(s): OG_05_0000481_tree ,
OG_06_0003301 (SeedPlants) Phylogenetic Tree(s): OG_06_0003301_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g008210.3.1
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00251200 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1C OS=Arabidopsis thaliana 0.08 Archaeplastida
AMTR_s00030p00132070 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein RZ1A OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00030p00198740 evm_27.TU.AmTr_v1... Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00154p00024620 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
AT1G74230 GR-RBP5 glycine-rich RNA-binding protein 5 0.05 Archaeplastida
AT3G26420 ATRZ-1A RNA-binding (RRM/RBD/RNP motifs) family protein with... 0.08 Archaeplastida
Cre17.g725301 No alias No description available 0.03 Archaeplastida
Cre17.g729150 No alias No description available 0.04 Archaeplastida
GSVIVT01021024001 No alias RNA processing.organelle machineries.RNA... 0.02 Archaeplastida
Gb_20856 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Gb_40269 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
LOC_Os03g46770.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
LOC_Os03g47800.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
LOC_Os08g04440.1 No alias RNA editing factor (ORRM) 0.02 Archaeplastida
LOC_Os12g31800.1 No alias RNA editing factor (ORRM) 0.02 Archaeplastida
MA_168323g0010 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Mp6g08160.1 No alias RNA chaperone (RZ1|GR-RBP) 0.02 Archaeplastida
Pp3c4_6610V3.1 No alias glycine-rich RNA-binding protein 3 0.02 Archaeplastida
Pp3c7_3360V3.1 No alias cold, circadian rhythm, and RNA binding 1 0.02 Archaeplastida
Zm00001e005260_P002 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida
Zm00001e012278_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.07 Archaeplastida
Zm00001e018330_P004 No alias RNA editing factor (ORRM) 0.02 Archaeplastida
Zm00001e028481_P002 No alias RNA chaperone (RZ1|GR-RBP). RNA editing factor (ORRM) 0.02 Archaeplastida
Zm00001e033010_P001 No alias RNA chaperone (RZ1|GR-RBP) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 17 57
IPR001878 Znf_CCHC 132 148
No external refs found!