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Description : Pumilio homolog 4 OS=Arabidopsis thaliana (sp|q9ss47|pum4_arath : 627.0)
Gene families : OG0000536 (Archaeplastida) Phylogenetic Tree(s): OG0000536_tree ,
OG_05_0000342 (LandPlants) Phylogenetic Tree(s): OG_05_0000342_tree ,
OG_06_0000990 (SeedPlants) Phylogenetic Tree(s): OG_06_0000990_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc11g008490.3.1 | |
| Cluster | HCCA: Cluster_170 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Pp3c3_36960V3.1 | No alias | pumilio 1 | 0.03 | Archaeplastida | |
| Pp3c8_3323V3.1 | No alias | pumilio 1 | 0.02 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003723 | RNA binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005543 | phospholipid binding | IEP | Neighborhood |
| MF | GO:0005544 | calcium-dependent phospholipid binding | IEP | Neighborhood |
| MF | GO:0008289 | lipid binding | IEP | Neighborhood |
| MF | GO:0015077 | monovalent inorganic cation transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015078 | proton transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015291 | secondary active transmembrane transporter activity | IEP | Neighborhood |
| MF | GO:0015297 | antiporter activity | IEP | Neighborhood |
| MF | GO:0015298 | solute:cation antiporter activity | IEP | Neighborhood |
| MF | GO:0015299 | solute:proton antiporter activity | IEP | Neighborhood |
| MF | GO:0016830 | carbon-carbon lyase activity | IEP | Neighborhood |
| MF | GO:0016831 | carboxy-lyase activity | IEP | Neighborhood |
| MF | GO:0019842 | vitamin binding | IEP | Neighborhood |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | Neighborhood |
| MF | GO:0043167 | ion binding | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| MF | GO:0070279 | vitamin B6 binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001313 | Pumilio_RNA-bd_rpt | 682 | 714 |
| IPR001313 | Pumilio_RNA-bd_rpt | 761 | 787 |
| IPR001313 | Pumilio_RNA-bd_rpt | 646 | 678 |
| IPR001313 | Pumilio_RNA-bd_rpt | 575 | 607 |
| IPR001313 | Pumilio_RNA-bd_rpt | 791 | 823 |
| IPR001313 | Pumilio_RNA-bd_rpt | 840 | 865 |
| IPR001313 | Pumilio_RNA-bd_rpt | 609 | 641 |
| IPR001313 | Pumilio_RNA-bd_rpt | 718 | 750 |
| IPR012940 | NABP | 468 | 565 |
| No external refs found! |