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  5. Solyc11g010840.2.1

Solyc11g010840.2.1


Description : RNA-binding KH domain-containing protein RCF3 OS=Arabidopsis thaliana (sp|q8w4b1|rcf3_arath : 167.0)


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0110865 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0088845 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g010840.2.1
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00033p00221750 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.05 Archaeplastida
AMTR_s00092p00116010 evm_27.TU.AmTr_v1... KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT5G15270 No alias RNA-binding KH domain-containing protein 0.03 Archaeplastida
AT5G64390 HEN4 RNA-binding KH domain-containing protein 0.04 Archaeplastida
GSVIVT01009261001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
GSVIVT01018244001 No alias RNA-binding KH domain-containing protein PEPPER... 0.02 Archaeplastida
GSVIVT01038571001 No alias RNA-binding KH domain-containing protein RCF3... 0.05 Archaeplastida
MA_10429211g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
Zm00001e004486_P005 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e026127_P004 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Zm00001e037947_P004 No alias no hits & (original description: none) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008134 transcription factor binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP Neighborhood
BP GO:0015780 nucleotide-sugar transmembrane transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016073 snRNA metabolic process IEP Neighborhood
BP GO:0016180 snRNA processing IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0017025 TBP-class protein binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034472 snRNA 3'-end processing IEP Neighborhood
BP GO:0034477 U6 snRNA 3'-end processing IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
BP GO:1901264 carbohydrate derivative transport IEP Neighborhood
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 36 86
IPR004088 KH_dom_type_1 547 608
IPR004088 KH_dom_type_1 141 201
No external refs found!