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  5. AMTR_s00032p00058660

AMTR_s00032p00058660 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.37

Description : Protein biosynthesis.cytosolic ribosome.large subunit (LSU).LSU processome component.NOG1 regulatory GTPase


Gene families : OG0003912 (Archaeplastida) Phylogenetic Tree(s): OG0003912_tree ,
OG_05_0003948 (LandPlants) Phylogenetic Tree(s): OG_05_0003948_tree ,
OG_06_0004055 (SeedPlants) Phylogenetic Tree(s): OG_06_0004055_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00058660
Cluster HCCA: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
AT1G50920 No alias Nucleolar GTP-binding protein 0.07 Archaeplastida
GSVIVT01025272001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 Archaeplastida
LOC_Os07g01920.1 No alias NOG1 LSU processome regulatory GTPase 0.03 Archaeplastida
MA_89272g0010 No alias NOG1 LSU processome regulatory GTPase 0.06 Archaeplastida
Pp3c20_4830V3.1 No alias Nucleolar GTP-binding protein 0.05 Archaeplastida
Solyc07g053730.4.1 No alias NOG1 LSU processome regulatory GTPase 0.03 Archaeplastida
Zm00001e030762_P002 No alias NOG1 LSU processome regulatory GTPase 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
MF GO:0015093 ferrous iron transmembrane transporter activity IEA Interproscan
BP GO:0015684 ferrous iron transport IEA Interproscan
CC GO:0016021 integral component of membrane IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005741 mitochondrial outer membrane IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
MF GO:0008026 ATP-dependent helicase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016887 ATPase activity IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
CC GO:0019867 outer membrane IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
CC GO:0031968 organelle outer membrane IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0042623 ATPase activity, coupled IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
MF GO:0070035 purine NTP-dependent helicase activity IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
InterPro domains Description Start Stop
IPR012973 NOG_C 410 463
IPR010674 NOG1_Rossman_fold_dom 235 292
No external refs found!