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  5. Solyc11g012570.3.1

Solyc11g012570.3.1


Description : Pentatricopeptide repeat-containing protein At3g51320 OS=Arabidopsis thaliana (sp|q0wvu0|pp278_arath : 459.0)


Gene families : OG0005064 (Archaeplastida) Phylogenetic Tree(s): OG0005064_tree ,
OG_05_0001276 (LandPlants) Phylogenetic Tree(s): OG_05_0001276_tree ,
OG_06_0000902 (SeedPlants) Phylogenetic Tree(s): OG_06_0000902_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g012570.3.1
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
AT3G51320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT5G37570 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.07 Archaeplastida
GSVIVT01029336001 No alias Pentatricopeptide repeat-containing protein At1g74630... 0.09 Archaeplastida
LOC_Os01g65840.1 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.06 Archaeplastida
LOC_Os02g41560.1 No alias Pentatricopeptide repeat-containing protein At5g66520... 0.07 Archaeplastida
LOC_Os04g33840.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
LOC_Os05g01635.1 No alias Pentatricopeptide repeat-containing protein At3g51320... 0.05 Archaeplastida
MA_29579g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.1 Archaeplastida
Zm00001e008183_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.07 Archaeplastida
Zm00001e019067_P001 No alias Pentatricopeptide repeat-containing protein At3g21470... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 484 513
IPR002885 Pentatricopeptide_repeat 330 358
IPR002885 Pentatricopeptide_repeat 170 196
IPR002885 Pentatricopeptide_repeat 227 275
No external refs found!