Solyc11g013280.1.1

Description : component PIROGI of SCAR/WAVE ARP2/3-activating complex

Gene families : OG0003345 (Archaeplastida) Phylogenetic Tree(s): OG0003345_tree ,
OG_05_0003636 (LandPlants) Phylogenetic Tree(s): OG_05_0003636_tree ,
OG_06_0003898 (SeedPlants) Phylogenetic Tree(s): OG_06_0003898_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g013280.1.1
Cluster	HCCA: Cluster_260

Target	Alias	Description	ECC score	Gene Family Method
Gb_18362	No alias	Protein PIR OS=Arabidopsis thaliana (sp\|q5s2c3\|pir_arath : 154.0)	0.03	Archaeplastida
Gb_18365	No alias	no hits & (original description: none)	0.02	Archaeplastida
Pp3c21_8020V3.1	No alias	transcription activators	0.06	Archaeplastida
Pp3c2_6040V3.1	No alias	transcription activators	0.04	Archaeplastida
Smo160351	No alias	Cytoskeleton.microfilament network.actin...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0008064	regulation of actin polymerization or depolymerization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0017016	Ras GTPase binding	None	Extended
MF	GO:0017048	Rho GTPase binding	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0030832	regulation of actin filament length	None	Extended
BP	GO:0030833	regulation of actin filament polymerization	IEA	Interproscan
MF	GO:0031267	small GTPase binding	None	Extended
BP	GO:0032271	regulation of protein polymerization	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
BP	GO:0032956	regulation of actin cytoskeleton organization	None	Extended
BP	GO:0032970	regulation of actin filament-based process	None	Extended
BP	GO:0033043	regulation of organelle organization	None	Extended
BP	GO:0043254	regulation of protein complex assembly	None	Extended
BP	GO:0044087	regulation of cellular component biogenesis	None	Extended
MF	GO:0048365	Rac GTPase binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051493	regulation of cytoskeleton organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090066	regulation of anatomical structure size	None	Extended
BP	GO:0110053	regulation of actin filament organization	None	Extended
BP	GO:1902903	regulation of supramolecular fiber organization	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	IEP	Neighborhood
MF	GO:0004057	arginyltransferase activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005643	nuclear pore	IEP	Neighborhood
BP	GO:0006605	protein targeting	IEP	Neighborhood
BP	GO:0006623	protein targeting to vacuole	IEP	Neighborhood
BP	GO:0006886	intracellular protein transport	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
BP	GO:0007062	sister chromatid cohesion	IEP	Neighborhood
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Neighborhood
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Neighborhood
BP	GO:0008104	protein localization	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0015031	protein transport	IEP	Neighborhood
BP	GO:0015833	peptide transport	IEP	Neighborhood
BP	GO:0016192	vesicle-mediated transport	IEP	Neighborhood
BP	GO:0016598	protein arginylation	IEP	Neighborhood
MF	GO:0016755	transferase activity, transferring amino-acyl groups	IEP	Neighborhood
MF	GO:0016779	nucleotidyltransferase activity	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
BP	GO:0017038	protein import	IEP	Neighborhood
BP	GO:0022402	cell cycle process	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030119	AP-type membrane coat adaptor complex	IEP	Neighborhood
CC	GO:0030131	clathrin adaptor complex	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033036	macromolecule localization	IEP	Neighborhood
BP	GO:0033365	protein localization to organelle	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	Neighborhood
BP	GO:0042886	amide transport	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0045184	establishment of protein localization	IEP	Neighborhood
BP	GO:0046907	intracellular transport	IEP	Neighborhood
BP	GO:0051641	cellular localization	IEP	Neighborhood
BP	GO:0051649	establishment of localization in cell	IEP	Neighborhood
CC	GO:0070531	BRCA1-A complex	IEP	Neighborhood
CC	GO:0070552	BRISC complex	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood
BP	GO:0071705	nitrogen compound transport	IEP	Neighborhood
BP	GO:0072594	establishment of protein localization to organelle	IEP	Neighborhood
BP	GO:0072665	protein localization to vacuole	IEP	Neighborhood
BP	GO:0072666	establishment of protein localization to vacuole	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Neighborhood
BP	GO:1903047	mitotic cell cycle process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR008081	Cytoplasmic_FMR1-int	399	1246
IPR009828	DUF1394	155	215

External Links

No external refs found!

Solyc11g013280.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation