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  5. AMTR_s00032p00095920

AMTR_s00032p00095920 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.60

Description : Vesicle trafficking.SNARE target membrane recognition and fusion complexes.R-type SNARE longin components.VAMP7-type protein


Gene families : OG0000293 (Archaeplastida) Phylogenetic Tree(s): OG0000293_tree ,
OG_05_0000618 (LandPlants) Phylogenetic Tree(s): OG_05_0000618_tree ,
OG_06_0000855 (SeedPlants) Phylogenetic Tree(s): OG_06_0000855_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00095920
Cluster HCCA: Cluster_118

Target Alias Description ECC score Gene Family Method Actions
Cre04.g225900 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
Gb_10498 No alias R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.04 Archaeplastida
Gb_17236 No alias VAMP7-type R-type SNARE longin protein 0.02 Archaeplastida
LOC_Os03g58840.1 No alias R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.02 Archaeplastida
LOC_Os06g07780.1 No alias VAMP7-type R-type SNARE longin protein 0.04 Archaeplastida
LOC_Os07g09600.1 No alias R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 Archaeplastida
Solyc02g069150.3.1 No alias R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.02 Archaeplastida
Zm00001e033056_P001 No alias R-SNARE component VAMP721/VAMP722 of SNARE cell-plate... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008378 galactosyltransferase activity IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001388 Synaptobrevin 129 177
IPR010908 Longin_dom 31 111
No external refs found!