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  5. AMTR_s00032p00109160

AMTR_s00032p00109160 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.70

Description : Cell wall.pectin.rhamnogalacturonan I.modification and degradation.beta-galactosidase


Gene families : OG0000133 (Archaeplastida) Phylogenetic Tree(s): OG0000133_tree ,
OG_05_0000245 (LandPlants) Phylogenetic Tree(s): OG_05_0000245_tree ,
OG_06_0024479 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00109160
Cluster HCCA: Cluster_248

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01005849001 No alias Beta-galactosidase 6 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
GSVIVT01018853001 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.02 Archaeplastida
LOC_Os02g12730.1 No alias beta-galactosidase (BGAL) 0.04 Archaeplastida
MA_10427427g0010 No alias beta-galactosidase (BGAL) 0.03 Archaeplastida
Smo269483 No alias Cell wall.pectin.rhamnogalacturonan I.modification and... 0.03 Archaeplastida
Solyc02g078950.4.1 No alias beta-galactosidase (BGAL) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
MF GO:0030246 carbohydrate binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003747 translation release factor activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004784 superoxide dismutase activity IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0006415 translational termination IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006801 superoxide metabolic process IEP Neighborhood
MF GO:0008079 translation termination factor activity IEP Neighborhood
MF GO:0009975 cyclase activity IEP Neighborhood
MF GO:0009976 tocopherol cyclase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017150 tRNA dihydrouridine synthase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0022411 cellular component disassembly IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0032984 protein-containing complex disassembly IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043624 cellular protein complex disassembly IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000922 Lectin_gal-bd_dom 760 836
IPR001944 Glycoside_Hdrlase_35 34 338
No external refs found!