1. Home
  2. Species
  3. Amborella trichopoda
  4. Sequence
  5. AMTR_s00032p00114260

AMTR_s00032p00114260 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.76

Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0002747 (LandPlants) Phylogenetic Tree(s): OG_05_0002747_tree ,
OG_06_0002302 (SeedPlants) Phylogenetic Tree(s): OG_06_0002302_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00114260
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00083p00065730 evm_27.TU.AmTr_v1... No description available 0.04 Archaeplastida
Cre02.g141050 No alias Protein argonaute PNH1 OS=Oryza sativa subsp. japonica 0.01 Archaeplastida
GSVIVT01001941001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Gb_04817 No alias no hits & (original description: none) 0.03 Archaeplastida
Smo98227 No alias Chromatin organisation.DNA methylation.canonical... 0.05 Archaeplastida
Solyc02g069280.2.1 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.02 Archaeplastida
Solyc03g111760.3.1 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001505 regulation of neurotransmitter levels IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004013 adenosylhomocysteinase activity IEP Neighborhood
MF GO:0004372 glycine hydroxymethyltransferase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004806 triglyceride lipase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
BP GO:0006544 glycine metabolic process IEP Neighborhood
BP GO:0006563 L-serine metabolic process IEP Neighborhood
BP GO:0006730 one-carbon metabolic process IEP Neighborhood
BP GO:0006855 drug transmembrane transport IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0015893 drug transport IEP Neighborhood
MF GO:0016298 lipase activity IEP Neighborhood
MF GO:0016597 amino acid binding IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016801 hydrolase activity, acting on ether bonds IEP Neighborhood
MF GO:0016802 trialkylsulfonium hydrolase activity IEP Neighborhood
MF GO:0031406 carboxylic acid binding IEP Neighborhood
BP GO:0042133 neurotransmitter metabolic process IEP Neighborhood
MF GO:0043177 organic acid binding IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR014811 ArgoL1 241 291
IPR003100 PAZ_dom 418 472
IPR003165 Piwi 648 944
No external refs found!