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  5. AMTR_s00032p00136310

AMTR_s00032p00136310 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.98

Description : Pentatricopeptide repeat-containing protein At1g79490, mitochondrial OS=Arabidopsis thaliana


Gene families : OG0009368 (Archaeplastida) Phylogenetic Tree(s): OG0009368_tree ,
OG_05_0009342 (LandPlants) Phylogenetic Tree(s): OG_05_0009342_tree ,
OG_06_0010461 (SeedPlants) Phylogenetic Tree(s): OG_06_0010461_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00136310
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
LOC_Os04g52290.1 No alias Pentatricopeptide repeat-containing protein At1g79490,... 0.04 Archaeplastida
Zm00001e006963_P001 No alias Pentatricopeptide repeat-containing protein At1g79490,... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 351 395
IPR002885 Pentatricopeptide_repeat 211 256
IPR002885 Pentatricopeptide_repeat 279 326
IPR002885 Pentatricopeptide_repeat 141 168
IPR002885 Pentatricopeptide_repeat 420 450
IPR002885 Pentatricopeptide_repeat 176 205
No external refs found!