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  5. AMTR_s00032p00145740

AMTR_s00032p00145740 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.109

Description : Pentatricopeptide repeat-containing protein At1g15510, chloroplastic OS=Arabidopsis thaliana


Gene families : OG0006821 (Archaeplastida) Phylogenetic Tree(s): OG0006821_tree ,
OG_05_0020444 (LandPlants) Phylogenetic Tree(s): No tree available for this family ,
OG_06_0019641 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00145740
Cluster HCCA: Cluster_106

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00144440 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g31920... 0.06 Archaeplastida
AMTR_s00010p00121230 No alias Pentatricopeptide repeat-containing protein At2g01510,... 0.03 Archaeplastida
AMTR_s00016p00242080 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g59720,... 0.03 Archaeplastida
AMTR_s00019p00093260 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g22410,... 0.05 Archaeplastida
AMTR_s00049p00220350 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g02980,... 0.03 Archaeplastida
AMTR_s00059p00175950 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.05 Archaeplastida
AMTR_s00092p00099090 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g08070,... 0.04 Archaeplastida
AMTR_s01859p00006880 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g29760,... 0.04 Archaeplastida
Solyc02g072010.3.1 No alias Pentatricopeptide repeat-containing protein At4g18840... 0.13 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004659 prenyltransferase activity IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 95 123
IPR002885 Pentatricopeptide_repeat 22 68
No external refs found!