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  5. Solyc11g040050.3.1

Solyc11g040050.3.1


Description : component TAF15 of TFIId basal transcription regulation complex


Gene families : OG0006677 (Archaeplastida) Phylogenetic Tree(s): OG0006677_tree ,
OG_05_0007121 (LandPlants) Phylogenetic Tree(s): OG_05_0007121_tree ,
OG_06_0007805 (SeedPlants) Phylogenetic Tree(s): OG_06_0007805_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g040050.3.1
Cluster HCCA: Cluster_217

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00107550 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.04 Archaeplastida
Gb_28670 No alias component TAF15 of TFIId basal transcription regulation complex 0.02 Archaeplastida
MA_10434282g0010 No alias component TAF15 of TFIId basal transcription regulation complex 0.03 Archaeplastida
Mp8g16600.1 No alias component TAF15 of TFIId basal transcription regulation complex 0.05 Archaeplastida
Pp3c17_960V3.1 No alias TBP-associated factor 15 0.04 Archaeplastida
Zm00001e010307_P004 No alias component TAF15 of TFIId basal transcription regulation complex 0.04 Archaeplastida
Zm00001e034916_P002 No alias component TAF15 of TFIId basal transcription regulation complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 15 90
IPR001876 Znf_RanBP2 222 248
IPR001876 Znf_RanBP2 153 182
No external refs found!