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  5. Solyc11g042930.2.1

Solyc11g042930.2.1


Description : target protein binding component SKP1/ASK1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0000418 (Archaeplastida) Phylogenetic Tree(s): OG0000418_tree ,
OG_05_0000338 (LandPlants) Phylogenetic Tree(s): OG_05_0000338_tree ,
OG_06_0000762 (SeedPlants) Phylogenetic Tree(s): OG_06_0000762_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g042930.2.1
Cluster HCCA: Cluster_266

Target Alias Description ECC score Gene Family Method Actions
AT2G03170 ASK14, SK14 SKP1-like 14 0.03 Archaeplastida
AT5G42190 ASK2, SKP1B E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein 0.03 Archaeplastida
Mp3g00120.1 No alias target protein binding component SKP1/ASK1 of... 0.02 Archaeplastida
Pp3c23_19260V3.1 No alias SKP1-like 4 0.02 Archaeplastida
Pp3c2_5520V3.1 No alias S phase kinase-associated protein 1 0.04 Archaeplastida
Smo271223 No alias Protein degradation.peptide tagging.Ubiquitin... 0.07 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0006511 ubiquitin-dependent protein catabolic process IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
InterPro domains Description Start Stop
IPR016073 Skp1_comp_POZ 5 64
IPR016072 Skp1_comp_dimer 106 153
No external refs found!