Solyc11g065250.1.1

Description : Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana (sp|q9fk93|pp406_arath : 701.0)

Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000000 (LandPlants) Phylogenetic Tree(s): OG_05_0000000_tree ,
OG_06_0000064 (SeedPlants) Phylogenetic Tree(s): OG_06_0000064_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g065250.1.1
Cluster	HCCA: Cluster_125

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00092p00064890	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At4g21065...	0.04	Archaeplastida
AMTR_s02193p00008230	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At3g02330,...	0.03	Archaeplastida
AT1G11290	CRR22	Pentatricopeptide repeat (PPR) superfamily protein	0.03	Archaeplastida
AT1G15510	VAC1, ECB2, ATECB2	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
AT2G02980	OTP85	Pentatricopeptide repeat (PPR) superfamily protein	0.07	Archaeplastida
AT3G13770	No alias	Pentatricopeptide repeat (PPR) superfamily protein	0.06	Archaeplastida
AT3G18970	MEF20	mitochondrial editing factor 20	0.03	Archaeplastida
AT3G22150	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT3G63370	OTP86	Tetratricopeptide repeat (TPR)-like superfamily protein	0.05	Archaeplastida
AT4G18750	DOT4	Pentatricopeptide repeat (PPR) superfamily protein	0.05	Archaeplastida
AT5G03800	emb1899, EMB175, EMB166	Pentatricopeptide repeat (PPR) superfamily protein	0.04	Archaeplastida
AT5G16860	No alias	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
AT5G55740	CRR21	Tetratricopeptide repeat (TPR)-like superfamily protein	0.03	Archaeplastida
GSVIVT01000072001	No alias	Pentatricopeptide repeat-containing protein At3g05340...	0.05	Archaeplastida
GSVIVT01000244001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01000420001	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
GSVIVT01003957001	No alias	Pentatricopeptide repeat-containing protein At5g65570...	0.04	Archaeplastida
GSVIVT01004939001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01007645001	No alias	Pentatricopeptide repeat-containing protein ELI1,...	0.03	Archaeplastida
GSVIVT01007937001	No alias	Pentatricopeptide repeat-containing protein At1g08070,...	0.03	Archaeplastida
GSVIVT01007974001	No alias	Pentatricopeptide repeat-containing protein At5g61400...	0.03	Archaeplastida
GSVIVT01009866001	No alias	Pentatricopeptide repeat-containing protein At1g25360...	0.03	Archaeplastida
GSVIVT01010125001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01010647001	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.05	Archaeplastida
GSVIVT01011735001	No alias	Pentatricopeptide repeat-containing protein At2g01510,...	0.03	Archaeplastida
GSVIVT01012174001	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.04	Archaeplastida
GSVIVT01012461001	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
GSVIVT01017209001	No alias	RNA processing.organelle machineries.RNA...	0.06	Archaeplastida
GSVIVT01018018001	No alias	Pentatricopeptide repeat-containing protein At3g22690...	0.03	Archaeplastida
GSVIVT01018098001	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.05	Archaeplastida
GSVIVT01018597001	No alias	RNA processing.organelle machineries.RNA...	0.05	Archaeplastida
GSVIVT01019231001	No alias	Pentatricopeptide repeat-containing protein At3g03580...	0.03	Archaeplastida
GSVIVT01021015001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01021023001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
GSVIVT01021246001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.06	Archaeplastida
GSVIVT01021756001	No alias	Pentatricopeptide repeat-containing protein At4g21300...	0.05	Archaeplastida
GSVIVT01021774001	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.04	Archaeplastida
GSVIVT01022230001	No alias	Pentatricopeptide repeat-containing protein At4g39530...	0.03	Archaeplastida
GSVIVT01023644001	No alias	Pentatricopeptide repeat-containing protein At4g30700...	0.05	Archaeplastida
GSVIVT01024493001	No alias	Pentatricopeptide repeat-containing protein At4g39952,...	0.07	Archaeplastida
GSVIVT01024870001	No alias	Pentatricopeptide repeat-containing protein At3g46790,...	0.04	Archaeplastida
GSVIVT01024912001	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.03	Archaeplastida
GSVIVT01025569001	No alias	Pentatricopeptide repeat-containing protein At5g66500,...	0.04	Archaeplastida
GSVIVT01026025001	No alias	Pentatricopeptide repeat-containing protein At3g13880...	0.05	Archaeplastida
GSVIVT01026881001	No alias	Pentatricopeptide repeat-containing protein At5g16860...	0.04	Archaeplastida
GSVIVT01029347001	No alias	Putative pentatricopeptide repeat-containing protein...	0.05	Archaeplastida
GSVIVT01030248001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01030443001	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.04	Archaeplastida
GSVIVT01031265001	No alias	Pentatricopeptide repeat-containing protein At5g66520...	0.05	Archaeplastida
GSVIVT01031733001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.03	Archaeplastida
GSVIVT01032394001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.05	Archaeplastida
GSVIVT01032994001	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
GSVIVT01033304001	No alias	Pentatricopeptide repeat-containing protein At2g02980,...	0.04	Archaeplastida
GSVIVT01033735001	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.04	Archaeplastida
GSVIVT01033837001	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
GSVIVT01035618001	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
GSVIVT01036169001	No alias	Pentatricopeptide repeat-containing protein At2g27610...	0.04	Archaeplastida
GSVIVT01036975001	No alias	Pentatricopeptide repeat-containing protein At4g33990...	0.09	Archaeplastida
GSVIVT01037332001	No alias	Pentatricopeptide repeat-containing protein At1g20230...	0.03	Archaeplastida
GSVIVT01037562001	No alias	RNA processing.organelle machineries.RNA...	0.03	Archaeplastida
Gb_00776	No alias	Pentatricopeptide repeat-containing protein At5g50390,...	0.05	Archaeplastida
Gb_01327	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.04	Archaeplastida
Gb_03345	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.03	Archaeplastida
Gb_20910	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
Gb_21270	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Gb_21443	No alias	Pentatricopeptide repeat-containing protein At3g63370,...	0.03	Archaeplastida
LOC_Os01g08120.1	No alias	RNA editing factor (OTP81)	0.05	Archaeplastida
LOC_Os02g07050.1	No alias	Pentatricopeptide repeat-containing protein At4g20770...	0.04	Archaeplastida
LOC_Os02g50280.1	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
LOC_Os03g04390.1	No alias	Pentatricopeptide repeat-containing protein At4g35130,...	0.05	Archaeplastida
LOC_Os03g13830.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.03	Archaeplastida
LOC_Os03g44210.2	No alias	RNA editing factor (SEL1/PDM1)	0.04	Archaeplastida
LOC_Os04g35650.1	No alias	Pentatricopeptide repeat-containing protein At3g26540...	0.04	Archaeplastida
LOC_Os04g39410.1	No alias	RNA editing factor (OTP86)	0.04	Archaeplastida
LOC_Os04g41120.1	No alias	Pentatricopeptide repeat-containing protein At4g38010...	0.04	Archaeplastida
LOC_Os04g51350.1	No alias	RNA editing factor (AEF1)	0.03	Archaeplastida
LOC_Os05g12130.1	No alias	RNA editing factor (ECD1)	0.04	Archaeplastida
LOC_Os05g49920.1	No alias	RNA editing factor (ECB2/VAC1)	0.04	Archaeplastida
LOC_Os06g27790.1	No alias	Pentatricopeptide repeat-containing protein At2g03880,...	0.03	Archaeplastida
LOC_Os07g02280.1	No alias	RNA editing factor (OTP80)	0.03	Archaeplastida
LOC_Os07g05560.1	No alias	Pentatricopeptide repeat-containing protein At4g21065...	0.03	Archaeplastida
LOC_Os09g24520.2	No alias	Pentatricopeptide repeat-containing protein At5g56310...	0.04	Archaeplastida
LOC_Os10g33730.1	No alias	Pentatricopeptide repeat-containing protein At3g57430,...	0.05	Archaeplastida
LOC_Os10g34720.1	No alias	Putative pentatricopeptide repeat-containing protein...	0.04	Archaeplastida
LOC_Os12g13110.1	No alias	Pentatricopeptide repeat-containing protein At2g22410,...	0.04	Archaeplastida
MA_187514g0010	No alias	Pentatricopeptide repeat-containing protein At1g11290,...	0.04	Archaeplastida
MA_71104g0010	No alias	Pentatricopeptide repeat-containing protein At3g12770...	0.04	Archaeplastida
Smo100125	No alias	Pentatricopeptide repeat-containing protein At5g39350...	0.02	Archaeplastida
Smo111075	No alias	Pentatricopeptide repeat-containing protein At4g02750...	0.03	Archaeplastida
Smo465	No alias	Pentatricopeptide repeat-containing protein At4g13650...	0.05	Archaeplastida
Smo85415	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
Smo90123	No alias	Pentatricopeptide repeat-containing protein At3g22690...	0.02	Archaeplastida
Smo98955	No alias	Pentatricopeptide repeat-containing protein At2g13600...	0.03	Archaeplastida
Zm00001e003605_P001	No alias	Pentatricopeptide repeat-containing protein DOT4,...	0.03	Archaeplastida
Zm00001e004121_P001	No alias	no hits & (original description: none)	0.08	Archaeplastida
Zm00001e007597_P001	No alias	Pentatricopeptide repeat-containing protein At3g09040,...	0.03	Archaeplastida
Zm00001e011467_P004	No alias	Pentatricopeptide repeat-containing protein At5g03800...	0.03	Archaeplastida
Zm00001e029186_P001	No alias	Pentatricopeptide repeat-containing protein At1g19720...	0.05	Archaeplastida
Zm00001e031351_P001	No alias	RNA editing factor (ECD1)	0.05	Archaeplastida
Zm00001e032499_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e034445_P001	No alias	Pentatricopeptide repeat-containing protein At5g48910...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004519	endonuclease activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	399	445
IPR002885	Pentatricopeptide_repeat	298	345
IPR002885	Pentatricopeptide_repeat	373	398
IPR002885	Pentatricopeptide_repeat	202	228
IPR002885	Pentatricopeptide_repeat	473	494
IPR002885	Pentatricopeptide_repeat	69	96
IPR002885	Pentatricopeptide_repeat	97	124
IPR032867	DYW_dom	572	696

External Links

No external refs found!

Solyc11g065250.1.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation