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  5. Solyc11g066300.3.1

Solyc11g066300.3.1


Description : component CAF of CRS2-CAF plastidial RNA splicing factor complexes


Gene families : OG0001098 (Archaeplastida) Phylogenetic Tree(s): OG0001098_tree ,
OG_05_0001090 (LandPlants) Phylogenetic Tree(s): OG_05_0001090_tree ,
OG_06_0003176 (SeedPlants) Phylogenetic Tree(s): OG_06_0003176_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc11g066300.3.1
Cluster HCCA: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00043140 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AMTR_s00062p00145630 evm_27.TU.AmTr_v1... CRS2-associated factor 2, mitochondrial OS=Oryza sativa... 0.04 Archaeplastida
AMTR_s00340p00004320 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
AT1G23400 CAF2, ATCAF2 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 Archaeplastida
AT2G20020 ATCAF1, CAF1 RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.11 Archaeplastida
GSVIVT01013770001 No alias RNA processing.organelle machineries.RNA... 0.03 Archaeplastida
GSVIVT01015331001 No alias RNA processing.organelle machineries.RNA... 0.09 Archaeplastida
Gb_32774 No alias CRS2-associated factor 2, chloroplastic OS=Arabidopsis... 0.05 Archaeplastida
MA_757065g0010 No alias CRS2-associated factor 2, chloroplastic OS=Oryza sativa... 0.06 Archaeplastida
Mp5g04250.1 No alias component CAF of CRS2-CAF plastidial RNA splicing factor... 0.03 Archaeplastida
Pp3c23_16010V3.1 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.06 Archaeplastida
Pp3c8_14060V3.1 No alias RNA-binding CRS1 / YhbY (CRM) domain-containing protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0003333 amino acid transmembrane transport IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006865 amino acid transport IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
BP GO:0015711 organic anion transport IEP Neighborhood
BP GO:0015849 organic acid transport IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
BP GO:0046942 carboxylic acid transport IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0098656 anion transmembrane transport IEP Neighborhood
BP GO:1903825 organic acid transmembrane transport IEP Neighborhood
BP GO:1905039 carboxylic acid transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001890 RNA-binding_CRM 312 395
IPR001890 RNA-binding_CRM 194 277
No external refs found!