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  5. AMTR_s00032p00190360

AMTR_s00032p00190360 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.171

Description : Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana


Gene families : OG0000000 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0013558 (LandPlants) Phylogenetic Tree(s): OG_05_0013558_tree ,
OG_06_0000000 (SeedPlants) Phylogenetic Tree(s): OG_06_0000000_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00190360
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00181560 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g25360... 0.03 Archaeplastida
AMTR_s00014p00090010 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g13600... 0.04 Archaeplastida
AMTR_s00029p00042600 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33680... 0.02 Archaeplastida
AMTR_s00032p00029450 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
AMTR_s00039p00023570 No alias Pentatricopeptide repeat-containing protein At4g33990... 0.03 Archaeplastida
AMTR_s00044p00169670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g17210... 0.03 Archaeplastida
AMTR_s00058p00187000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g33760... 0.03 Archaeplastida
AMTR_s00061p00127300 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g12770... 0.03 Archaeplastida
AMTR_s00092p00078040 No alias Pentatricopeptide repeat-containing protein At4g35130,... 0.03 Archaeplastida
AMTR_s00099p00036710 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g71490... 0.03 Archaeplastida
AMTR_s00232p00000850 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g21090... 0.03 Archaeplastida
AMTR_s00439p00010860 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida
AT1G14470 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT2G46050 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.04 Archaeplastida
AT3G08820 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT4G14170 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT4G39530 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
AT5G08490 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01028819001 No alias Pentatricopeptide repeat-containing protein At5g52850,... 0.03 Archaeplastida
GSVIVT01029382001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os01g55960.1 No alias Pentatricopeptide repeat-containing protein At5g56310... 0.03 Archaeplastida
LOC_Os03g32620.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
LOC_Os05g24150.1 No alias Pentatricopeptide repeat-containing protein At2g34400... 0.03 Archaeplastida
LOC_Os05g38190.2 No alias Pentatricopeptide repeat-containing protein At2g27610... 0.02 Archaeplastida
LOC_Os06g08660.1 No alias Pentatricopeptide repeat-containing protein At4g30700... 0.02 Archaeplastida
LOC_Os06g20870.1 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
LOC_Os10g30760.1 No alias Pentatricopeptide repeat-containing protein At3g24000,... 0.03 Archaeplastida
LOC_Os10g40920.1 No alias RNA editing factor (MEF13) 0.02 Archaeplastida
LOC_Os11g01860.1 No alias Pentatricopeptide repeat-containing protein At3g09040,... 0.02 Archaeplastida
Smo420323 No alias Pentatricopeptide repeat-containing protein At4g32430,... 0.03 Archaeplastida
Smo97139 No alias Pentatricopeptide repeat-containing protein At2g22070... 0.02 Archaeplastida
Solyc01g097670.4.1 No alias RNA editing factor (ECD1) 0.02 Archaeplastida
Solyc01g104090.4.1 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.02 Archaeplastida
Solyc02g088650.1.1 No alias Pentatricopeptide repeat-containing protein At5g39350... 0.02 Archaeplastida
Solyc06g084580.1.1 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.02 Archaeplastida
Zm00001e001038_P001 No alias Pentatricopeptide repeat-containing protein At1g08070,... 0.02 Archaeplastida
Zm00001e011923_P001 No alias Pentatricopeptide repeat-containing protein At4g21300... 0.04 Archaeplastida
Zm00001e013211_P001 No alias Pentatricopeptide repeat-containing protein At5g48910... 0.02 Archaeplastida
Zm00001e013713_P001 No alias Pentatricopeptide repeat-containing protein At4g20770... 0.03 Archaeplastida
Zm00001e020567_P001 No alias RNA editing factor (MEF7) 0.04 Archaeplastida
Zm00001e031396_P001 No alias Pentatricopeptide repeat-containing protein At1g20230... 0.03 Archaeplastida
Zm00001e032242_P001 No alias Pentatricopeptide repeat-containing protein At1g18485... 0.03 Archaeplastida
Zm00001e033335_P001 No alias Pentatricopeptide repeat-containing protein At5g61800... 0.02 Archaeplastida
Zm00001e035419_P001 No alias Pentatricopeptide repeat-containing protein At1g25360... 0.02 Archaeplastida
Zm00001e036537_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.02 Archaeplastida
Zm00001e038850_P001 No alias Pentatricopeptide repeat-containing protein DOT4,... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003909 DNA ligase activity IEP Neighborhood
MF GO:0003910 DNA ligase (ATP) activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0003993 acid phosphatase activity IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
MF GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016886 ligase activity, forming phosphoric ester bonds IEP Neighborhood
MF GO:0016972 thiol oxidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 447 492
IPR002885 Pentatricopeptide_repeat 587 614
IPR002885 Pentatricopeptide_repeat 104 130
IPR002885 Pentatricopeptide_repeat 76 102
IPR002885 Pentatricopeptide_repeat 242 270
IPR002885 Pentatricopeptide_repeat 135 162
IPR002885 Pentatricopeptide_repeat 215 240
No external refs found!