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Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.178
Description : Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana
Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000415 (SeedPlants) Phylogenetic Tree(s): OG_06_0000415_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: AMTR_s00032p00197250 | |
| Cluster | HCCA: Cluster_264 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G80150 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.05 | Archaeplastida | |
| AT5G46100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Archaeplastida | |
| LOC_Os01g63400.1 | No alias | Pentatricopeptide repeat-containing protein At3g09060... | 0.04 | Archaeplastida | |
| MA_477021g0010 | No alias | Pentatricopeptide repeat-containing protein At1g61870,... | 0.03 | Archaeplastida | |
| Mp3g05190.1 | No alias | Pentatricopeptide repeat-containing protein At1g62930,... | 0.02 | Archaeplastida | |
| Zm00001e028938_P001 | No alias | Pentatricopeptide repeat-containing protein At1g55890,... | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0001882 | nucleoside binding | IEP | Neighborhood |
| MF | GO:0001883 | purine nucleoside binding | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003684 | damaged DNA binding | IEP | Neighborhood |
| MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | Neighborhood |
| MF | GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity | IEP | Neighborhood |
| MF | GO:0003924 | GTPase activity | IEP | Neighborhood |
| MF | GO:0004386 | helicase activity | IEP | Neighborhood |
| MF | GO:0004527 | exonuclease activity | IEP | Neighborhood |
| MF | GO:0005092 | GDP-dissociation inhibitor activity | IEP | Neighborhood |
| MF | GO:0005094 | Rho GDP-dissociation inhibitor activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005525 | GTP binding | IEP | Neighborhood |
| CC | GO:0005643 | nuclear pore | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006259 | DNA metabolic process | IEP | Neighborhood |
| BP | GO:0006284 | base-excision repair | IEP | Neighborhood |
| BP | GO:0006289 | nucleotide-excision repair | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| MF | GO:0008026 | ATP-dependent helicase activity | IEP | Neighborhood |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | Neighborhood |
| BP | GO:0008612 | peptidyl-lysine modification to peptidyl-hypusine | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| MF | GO:0016462 | pyrophosphatase activity | IEP | Neighborhood |
| MF | GO:0016787 | hydrolase activity | IEP | Neighborhood |
| MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Neighborhood |
| MF | GO:0016817 | hydrolase activity, acting on acid anhydrides | IEP | Neighborhood |
| MF | GO:0016818 | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | IEP | Neighborhood |
| MF | GO:0016887 | ATPase activity | IEP | Neighborhood |
| MF | GO:0017111 | nucleoside-triphosphatase activity | IEP | Neighborhood |
| BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
| BP | GO:0018205 | peptidyl-lysine modification | IEP | Neighborhood |
| MF | GO:0019001 | guanyl nucleotide binding | IEP | Neighborhood |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Neighborhood |
| MF | GO:0030695 | GTPase regulator activity | IEP | Neighborhood |
| MF | GO:0032549 | ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032550 | purine ribonucleoside binding | IEP | Neighborhood |
| MF | GO:0032561 | guanyl ribonucleotide binding | IEP | Neighborhood |
| MF | GO:0034061 | DNA polymerase activity | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0042254 | ribosome biogenesis | IEP | Neighborhood |
| MF | GO:0042623 | ATPase activity, coupled | IEP | Neighborhood |
| BP | GO:0044085 | cellular component biogenesis | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051604 | protein maturation | IEP | Neighborhood |
| MF | GO:0060589 | nucleoside-triphosphatase regulator activity | IEP | Neighborhood |
| MF | GO:0070035 | purine NTP-dependent helicase activity | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| No external refs found! |