Solyc11g069190.2.1

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000395 (LandPlants) Phylogenetic Tree(s): OG_05_0000395_tree ,
OG_06_0002431 (SeedPlants) Phylogenetic Tree(s): OG_06_0002431_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc11g069190.2.1
Cluster	HCCA: Cluster_135

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00221770	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
AMTR_s00034p00110140	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00155p00082980	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.02	Archaeplastida
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.03	Archaeplastida
GSVIVT01025159001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01035205001	No alias	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Gb_31132	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_39686	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os10g33940.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
MA_10432528g0010	No alias	transcription factor (ARF)	0.04	Archaeplastida
MA_10432580g0010	No alias	transcription factor (ARF)	0.02	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.04	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Pp3c27_60V3.1	No alias	auxin response factor 2	0.02	Archaeplastida
Pp3c5_9420V3.1	No alias	auxin response factor 2	0.03	Archaeplastida
Solyc08g008380.4.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e003229_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e006577_P003	No alias	transcription factor (ARF)	0.05	Archaeplastida
Zm00001e018126_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e032135_P002	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e036249_P003	No alias	transcription factor (ARF)	0.02	Archaeplastida
Zm00001e041248_P001	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e041910_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004427	inorganic diphosphatase activity	IEP	Neighborhood
MF	GO:0005215	transporter activity	IEP	Neighborhood
MF	GO:0005244	voltage-gated ion channel activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015297	antiporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0022832	voltage-gated channel activity	IEP	Neighborhood
MF	GO:0022836	gated channel activity	IEP	Neighborhood
MF	GO:0022839	ion gated channel activity	IEP	Neighborhood
MF	GO:0022857	transmembrane transporter activity	IEP	Neighborhood
MF	GO:0030246	carbohydrate binding	IEP	Neighborhood
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Neighborhood
MF	GO:0051087	chaperone binding	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0055085	transmembrane transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	176	277
IPR010525	Auxin_resp	303	383
IPR033389	AUX/IAA_dom	676	767

External Links

No external refs found!

Solyc11g069190.2.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation