1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g005580.2.1

Solyc12g005580.2.1


Description : SYP1-group Qa-type SNARE component


Gene families : OG0000372 (Archaeplastida) Phylogenetic Tree(s): OG0000372_tree ,
OG_05_0000804 (LandPlants) Phylogenetic Tree(s): OG_05_0000804_tree ,
OG_06_0000894 (SeedPlants) Phylogenetic Tree(s): OG_06_0000894_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g005580.2.1
Cluster HCCA: Cluster_151

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00136390 evm_27.TU.AmTr_v1... Vesicle trafficking.SNARE target membrane recognition... 0.06 Archaeplastida
AT1G11250 SYP125, ATSYP125 syntaxin of plants 125 0.1 Archaeplastida
AT1G61290 ATSYP124, SYP124 syntaxin of plants 124 0.03 Archaeplastida
AT3G03800 ATSYP131, SYP131 syntaxin of plants 131 0.15 Archaeplastida
AT3G11820 SYP121,... syntaxin of plants 121 0.04 Archaeplastida
AT3G52400 SYP122, ATSYP122 syntaxin of plants 122 0.04 Archaeplastida
AT4G03330 SYP123, ATSYP123 syntaxin of plants 123 0.04 Archaeplastida
Cre13.g588550 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
GSVIVT01006716001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.04 Archaeplastida
GSVIVT01030578001 No alias Vesicle trafficking.SNARE target membrane recognition... 0.07 Archaeplastida
Gb_34888 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
LOC_Os02g11890.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
LOC_Os03g57310.1 No alias SYP1-group Qa-type SNARE component 0.03 Archaeplastida
LOC_Os06g39050.1 No alias SYP1-group Qa-type SNARE component 0.09 Archaeplastida
LOC_Os07g07000.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
MA_10427190g0010 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Mp7g13190.1 No alias SYP1-group Qa-type SNARE component 0.01 Archaeplastida
Smo443146 No alias Vesicle trafficking.SNARE target membrane recognition... 0.02 Archaeplastida
Solyc10g008570.3.1 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Solyc10g081850.3.1 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
Zm00001e011479_P001 No alias SYP1-group Qa-type SNARE component 0.02 Archaeplastida
Zm00001e030621_P001 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida
Zm00001e037387_P002 No alias SYP1-group Qa-type SNARE component 0.04 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030570 pectate lyase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
InterPro domains Description Start Stop
IPR000727 T_SNARE_dom 246 296
IPR006011 Syntaxin_N 39 244
No external refs found!