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  5. Solyc12g006140.2.1

Solyc12g006140.2.1


Description : component LHCb1/2/3 of LHC-II complex


Gene families : OG0000035 (Archaeplastida) Phylogenetic Tree(s): OG0000035_tree ,
OG_05_0000162 (LandPlants) Phylogenetic Tree(s): OG_05_0000162_tree ,
OG_06_0000359 (SeedPlants) Phylogenetic Tree(s): OG_06_0000359_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g006140.2.1
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00251360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00009p00268360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00010p00264770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
AMTR_s00013p00180670 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
AMTR_s00022p00112770 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00029p00239610 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00045p00069900 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00061p00059490 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
AMTR_s00088p00153020 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
AMTR_s00099p00139960 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
AMTR_s00131p00114510 evm_27.TU.AmTr_v1... Photosystem I chlorophyll a/b-binding protein 6,... 0.02 Archaeplastida
AMTR_s00153p00078810 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
AMTR_s00175p00040360 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
AMTR_s00189p00032350 evm_27.TU.AmTr_v1... Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
AT1G15820 CP24, LHCB6 light harvesting complex photosystem II subunit 6 0.09 Archaeplastida
AT1G29910 CAB3, AB180, LHCB1.2 chlorophyll A/B binding protein 3 0.06 Archaeplastida
AT1G29920 CAB2, AB165, LHCB1.1 chlorophyll A/B-binding protein 2 0.07 Archaeplastida
AT1G29930 LHCB1.3, CAB140,... chlorophyll A/B binding protein 1 0.04 Archaeplastida
AT1G45474 LHCA5 photosystem I light harvesting complex gene 5 0.03 Archaeplastida
AT1G61520 LHCA3 photosystem I light harvesting complex gene 3 0.07 Archaeplastida
AT1G76570 No alias Chlorophyll A-B binding family protein 0.03 Archaeplastida
AT2G05070 LHCB2.2, LHCB2 photosystem II light harvesting complex gene 2.2 0.11 Archaeplastida
AT2G05100 LHCB2.1, LHCB2 photosystem II light harvesting complex gene 2.1 0.11 Archaeplastida
AT2G34420 LHCB1.5, LHB1B2 photosystem II light harvesting complex gene B1B2 0.07 Archaeplastida
AT3G08940 LHCB4.2 light harvesting complex photosystem II 0.05 Archaeplastida
AT3G27690 LHCB2.3, LHCB2, LHCB2.4 photosystem II light harvesting complex gene 2.3 0.07 Archaeplastida
AT3G47470 CAB4, LHCA4 light-harvesting chlorophyll-protein complex I subunit A4 0.06 Archaeplastida
AT3G54890 LHCA1 photosystem I light harvesting complex gene 1 0.1 Archaeplastida
AT3G61470 LHCA2 photosystem I light harvesting complex gene 2 0.1 Archaeplastida
AT4G10340 LHCB5 light harvesting complex of photosystem II 5 0.06 Archaeplastida
AT5G01530 LHCB4.1 light harvesting complex photosystem II 0.11 Archaeplastida
AT5G28450 No alias Chlorophyll A-B binding family protein 0.03 Archaeplastida
AT5G54270 LHCB3*1, LHCB3 light-harvesting chlorophyll B-binding protein 3 0.1 Archaeplastida
Cre01.g066917 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre03.g156900 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre04.g232104 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre06.g272650 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Cre06.g278213 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.06 Archaeplastida
Cre06.g283050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Cre06.g283950 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
Cre06.g284250 No alias Photosynthesis.photophosphorylation.photosystem... 0.02 Archaeplastida
Cre06.g285250 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
Cre07.g344950 No alias Photosystem I chlorophyll a/b-binding protein 5,... 0.05 Archaeplastida
Cre10.g425900 No alias Chlorophyll a-b binding protein 4, chloroplastic... 0.06 Archaeplastida
Cre10.g452050 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.06 Archaeplastida
Cre11.g467573 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Cre12.g508750 No alias Photosystem I chlorophyll a/b-binding protein 6,... 0.04 Archaeplastida
Cre12.g548400 No alias Photosynthesis.photophosphorylation.photosystem... 0.06 Archaeplastida
Cre12.g548950 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
Cre16.g673650 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Cre16.g687900 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
Cre17.g720250 No alias Photosynthesis.photophosphorylation.photosystem... 0.05 Archaeplastida
GSVIVT01007988001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.05 Archaeplastida
GSVIVT01009498001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.03 Archaeplastida
GSVIVT01010483001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.02 Archaeplastida
GSVIVT01013450001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01014439001 No alias Photosynthesis.photophosphorylation.photosystem... 0.03 Archaeplastida
GSVIVT01016295001 No alias Photosynthesis.photophosphorylation.photosystem I.LHC-I... 0.04 Archaeplastida
GSVIVT01019377001 No alias Photosystem I chlorophyll a/b-binding protein 3-1,... 0.06 Archaeplastida
GSVIVT01020858001 No alias Chlorophyll a-b binding protein 40, chloroplastic... 0.03 Archaeplastida
GSVIVT01021405001 No alias Chlorophyll a-b binding protein 21, chloroplastic... 0.07 Archaeplastida
GSVIVT01021406001 No alias Chlorophyll a-b binding protein 2, chloroplastic... 0.03 Archaeplastida
GSVIVT01030053001 No alias Chlorophyll a-b binding protein 151, chloroplastic... 0.04 Archaeplastida
GSVIVT01037111001 No alias Photosynthesis.photophosphorylation.photosystem... 0.04 Archaeplastida
Gb_10163 No alias component LHCa3 of LHC-I complex 0.02 Archaeplastida
Gb_18375 No alias component LHCa1 of LHC-I complex 0.04 Archaeplastida
Gb_27633 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
Gb_30379 No alias Chlorophyll a-b binding protein CP26, chloroplastic... 0.03 Archaeplastida
Gb_32082 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
Gb_41161 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
LOC_Os01g41710.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
LOC_Os01g52240.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
LOC_Os02g10390.1 No alias component LHCa3 of LHC-I complex 0.09 Archaeplastida
LOC_Os03g39610.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
LOC_Os04g38410.1 No alias component LHCb6 of LHC-II complex 0.03 Archaeplastida
LOC_Os06g21590.1 No alias component LHCa1 of LHC-I complex 0.1 Archaeplastida
LOC_Os07g37240.1 No alias component LHCb4 of LHC-II complex 0.09 Archaeplastida
LOC_Os07g37550.1 No alias component LHCb1/2/3 of LHC-II complex 0.1 Archaeplastida
LOC_Os07g38960.1 No alias component LHCa2 of LHC-I complex 0.04 Archaeplastida
LOC_Os08g33820.1 No alias component LHCa4 of LHC-I complex 0.07 Archaeplastida
LOC_Os09g12540.1 No alias component LHCq of LHC-II complex 0.05 Archaeplastida
LOC_Os09g17740.1 No alias component LHCb1/2/3 of LHC-II complex 0.09 Archaeplastida
LOC_Os11g13890.1 No alias component LHCb5 of LHC-II complex 0.06 Archaeplastida
MA_10431300g0020 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
MA_10431493g0010 No alias component LHCa1 of LHC-I complex 0.03 Archaeplastida
MA_131587g0010 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
MA_176279g0010 No alias component LHCb5 of LHC-II complex 0.04 Archaeplastida
MA_18273g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_267089g0010 No alias Chlorophyll a-b binding protein type I, chloroplastic... 0.06 Archaeplastida
MA_65346g0010 No alias Chlorophyll a-b binding protein P4, chloroplastic... 0.04 Archaeplastida
MA_815900g0010 No alias component LHCa3 of LHC-I complex 0.04 Archaeplastida
MA_97315g0010 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp1g16850.1 No alias component LHCb4 of LHC-II complex 0.05 Archaeplastida
Mp1g29620.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp2g15420.1 No alias component LHCa1 of LHC-I complex 0.05 Archaeplastida
Mp3g07840.1 No alias component LHCa4 of LHC-I complex 0.05 Archaeplastida
Mp4g00930.1 No alias component LHCa3 of LHC-I complex 0.05 Archaeplastida
Mp4g10900.1 No alias component LHCb5 of LHC-II complex 0.04 Archaeplastida
Mp6g01650.1 No alias component LHCb6 of LHC-II complex 0.05 Archaeplastida
Mp7g05530.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g05880.1 No alias component LHCb1/2/3 of LHC-II complex 0.04 Archaeplastida
Mp7g05980.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp7g06760.1 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Mp7g06770.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g08940.1 No alias component LHCb1/2/3 of LHC-II complex 0.02 Archaeplastida
Mp7g09180.1 No alias component LHCb1/2/3 of LHC-II complex 0.03 Archaeplastida
Mp8g13180.1 No alias component LHCa2 of LHC-I complex 0.05 Archaeplastida
Pp3c10_25360V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c10_25415V3.1 No alias photosystem I light harvesting complex gene 2 0.05 Archaeplastida
Pp3c10_25450V3.1 No alias photosystem I light harvesting complex gene 2 0.06 Archaeplastida
Pp3c10_3020V3.1 No alias photosystem II light harvesting complex gene 2.3 0.05 Archaeplastida
Pp3c12_25430V3.1 No alias light harvesting complex photosystem II 0.06 Archaeplastida
Pp3c12_25460V3.1 No alias light harvesting complex photosystem II 0.07 Archaeplastida
Pp3c13_14980V3.1 No alias photosystem I light harvesting complex gene 1 0.05 Archaeplastida
Pp3c13_5930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c16_16040V3.1 No alias photosystem I light harvesting complex gene 3 0.05 Archaeplastida
Pp3c18_8100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.04 Archaeplastida
Pp3c19_20900V3.1 No alias light-harvesting chlorophyll B-binding protein 3 0.08 Archaeplastida
Pp3c1_34210V3.1 No alias light harvesting complex photosystem II subunit 6 0.04 Archaeplastida
Pp3c1_34240V3.1 No alias light harvesting complex photosystem II subunit 6 0.05 Archaeplastida
Pp3c20_23240V3.1 No alias photosystem I light harvesting complex gene 2 0.04 Archaeplastida
Pp3c21_3950V3.1 No alias photosystem II light harvesting complex gene 2.1 0.06 Archaeplastida
Pp3c25_1690V3.1 No alias Chlorophyll A-B binding family protein 0.03 Archaeplastida
Pp3c26_12230V3.1 No alias light harvesting complex of photosystem II 5 0.05 Archaeplastida
Pp3c26_12240V3.1 No alias light harvesting complex of photosystem II 5 0.04 Archaeplastida
Pp3c26_6740V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c27_7010V3.1 No alias photosystem I light harvesting complex gene 3 0.05 Archaeplastida
Pp3c27_7020V3.1 No alias photosystem I light harvesting complex gene 3 0.05 Archaeplastida
Pp3c2_35930V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c2_36380V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c2_36570V3.1 No alias photosystem II light harvesting complex gene 2.1 0.02 Archaeplastida
Pp3c3_12510V3.1 No alias photosystem I light harvesting complex gene 1 0.05 Archaeplastida
Pp3c3_4100V3.1 No alias photosystem II light harvesting complex gene 2.1 0.05 Archaeplastida
Pp3c4_29150V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_29270V3.1 No alias photosystem I light harvesting complex gene 1 0.03 Archaeplastida
Pp3c4_5680V3.1 No alias light harvesting complex photosystem II 0.05 Archaeplastida
Pp3c4_5690V3.1 No alias light harvesting complex photosystem II 0.06 Archaeplastida
Pp3c6_12510V3.1 No alias photosystem II light harvesting complex gene 2.1 0.03 Archaeplastida
Pp3c6_22090V3.1 No alias photosystem I light harvesting complex gene 3 0.05 Archaeplastida
Zm00001e004129_P001 No alias component LHCa4 of LHC-I complex 0.08 Archaeplastida
Zm00001e004940_P001 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Zm00001e004941_P001 No alias component LHCb1/2/3 of LHC-II complex 0.05 Archaeplastida
Zm00001e006561_P001 No alias component LHCb6 of LHC-II complex 0.05 Archaeplastida
Zm00001e009885_P001 No alias component LHCa6 of LHC-I complex 0.04 Archaeplastida
Zm00001e010547_P001 No alias component LHCb4 of LHC-II complex 0.07 Archaeplastida
Zm00001e011045_P002 No alias component LHCb5 of LHC-II complex 0.06 Archaeplastida
Zm00001e013742_P001 No alias component LHCa1 of LHC-I complex 0.08 Archaeplastida
Zm00001e020625_P001 No alias Chlorophyll a-b binding protein 48, chloroplastic OS=Zea... 0.04 Archaeplastida
Zm00001e020627_P001 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Zm00001e021290_P001 No alias component LHCb5 of LHC-II complex 0.05 Archaeplastida
Zm00001e022453_P001 No alias component LHCa4 of LHC-I complex 0.06 Archaeplastida
Zm00001e025141_P001 No alias component LHCa1 of LHC-I complex 0.07 Archaeplastida
Zm00001e026547_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e032450_P001 No alias Chlorophyll a-b binding protein, chloroplastic OS=Zea... 0.06 Archaeplastida
Zm00001e033739_P001 No alias component LHCq of LHC-II complex 0.06 Archaeplastida
Zm00001e034922_P001 No alias Chlorophyll a-b binding protein 1, chloroplastic OS=Zea... 0.06 Archaeplastida
Zm00001e035235_P001 No alias component LHCb4 of LHC-II complex 0.08 Archaeplastida
Zm00001e035249_P001 No alias component LHCb1/2/3 of LHC-II complex 0.06 Archaeplastida
Zm00001e035349_P002 No alias component LHCa2 of LHC-I complex 0.07 Archaeplastida
Zm00001e041918_P001 No alias component LHCb6 of LHC-II complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004332 fructose-bisphosphate aldolase activity IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009538 photosystem I reaction center IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016832 aldehyde-lyase activity IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022796 Chloroa_b-bind 66 231
No external refs found!