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  5. Solyc12g006320.3.1

Solyc12g006320.3.1


Description : RNA helicase (PMH)


Gene families : OG0000607 (Archaeplastida) Phylogenetic Tree(s): OG0000607_tree ,
OG_05_0000974 (LandPlants) Phylogenetic Tree(s): OG_05_0000974_tree ,
OG_06_0003526 (SeedPlants) Phylogenetic Tree(s): OG_06_0003526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g006320.3.1

Target Alias Description ECC score Gene Family Method Actions
AT3G22330 PMH2, ATRH53 putative mitochondrial RNA helicase 2 0.05 Archaeplastida
AT5G26742 emb1138 DEAD box RNA helicase (RH3) 0.03 Archaeplastida
Gb_10087 No alias DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa... 0.03 Archaeplastida
Gb_35745 No alias RH3 plastidial RNA basal splicing factor 0.03 Archaeplastida
Gb_39948 No alias DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa... 0.05 Archaeplastida
LOC_Os03g61220.1 No alias RH3 plastidial RNA basal splicing factor 0.05 Archaeplastida
LOC_Os12g41715.1 No alias RNA helicase (PMH) 0.02 Archaeplastida
MA_10425844g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e003219_P001 No alias RNA helicase (PMH) 0.02 Archaeplastida
Zm00001e006243_P001 No alias RH3 plastidial RNA basal splicing factor 0.02 Archaeplastida
Zm00001e011716_P001 No alias RH3 plastidial RNA basal splicing factor 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 270 378
IPR011545 DEAD/DEAH_box_helicase_dom 63 230
No external refs found!