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  5. Solyc12g008460.2.1

Solyc12g008460.2.1


Description : Senescence/dehydration-associated protein At4g35985, chloroplastic OS=Arabidopsis thaliana (sp|f4jnx2|sdeh4_arath : 209.0)


Gene families : OG0000668 (Archaeplastida) Phylogenetic Tree(s): OG0000668_tree ,
OG_05_0000954 (LandPlants) Phylogenetic Tree(s): OG_05_0000954_tree ,
OG_06_0002317 (SeedPlants) Phylogenetic Tree(s): OG_06_0002317_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g008460.2.1
Cluster HCCA: Cluster_28

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00056p00140490 evm_27.TU.AmTr_v1... Senescence/dehydration-associated protein At4g35985,... 0.04 Archaeplastida
AMTR_s00056p00140820 evm_27.TU.AmTr_v1... Senescence/dehydration-associated protein At4g35985,... 0.05 Archaeplastida
AT3G21600 No alias Senescence/dehydration-associated protein-related 0.04 Archaeplastida
AT3G51250 No alias Senescence/dehydration-associated protein-related 0.03 Archaeplastida
AT4G35985 No alias Senescence/dehydration-associated protein-related 0.03 Archaeplastida
LOC_Os01g52480.1 No alias Senescence/dehydration-associated protein At4g35985,... 0.03 Archaeplastida
LOC_Os03g13840.2 No alias Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic... 0.03 Archaeplastida
MA_10230083g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_460372g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_6622744g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_817099g0010 No alias Senescence/dehydration-associated protein At3g51250... 0.05 Archaeplastida
Pp3c6_8990V3.1 No alias Senescence/dehydration-associated protein-related 0.02 Archaeplastida
Smo111719 No alias Senescence/dehydration-associated protein At4g35985,... 0.02 Archaeplastida
Solyc02g062100.4.1 No alias Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic... 0.05 Archaeplastida
Zm00001e028202_P001 No alias Senescence/dehydration-associated protein At4g35985,... 0.04 Archaeplastida
Zm00001e038603_P001 No alias Protein EARLY-RESPONSIVE TO DEHYDRATION 7, chloroplastic... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009606 tropism IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010274 hydrotropism IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR009686 Senescence/spartin 170 347
No external refs found!