AMTR_s00032p00238080 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00032.270

Description : Receptor-like protein 4 OS=Arabidopsis thaliana


Gene families : OG0001834 (Archaeplastida) Phylogenetic Tree(s): OG0001834_tree ,
OG_05_0003552 (LandPlants) Phylogenetic Tree(s): OG_05_0003552_tree ,
OG_06_0006044 (SeedPlants) Phylogenetic Tree(s): OG_06_0006044_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00032p00238080
Cluster HCCA: Cluster_240

Target Alias Description ECC score Gene Family Method Actions
LOC_Os01g04720.1 No alias Receptor-like protein 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os07g31840.1 No alias Receptor-like protein 4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Pp3c27_5920V3.1 No alias receptor like protein 4 0.02 Archaeplastida
Pp3c9_7920V3.1 No alias receptor like protein 4 0.03 Archaeplastida
Smo133089 No alias Receptor-like protein 4 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc02g077850.3.1 No alias Receptor-like protein 4 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e035049_P002 No alias Receptor-like protein 4 OS=Arabidopsis thaliana... 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005543 phospholipid binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0008219 cell death IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 444 463
IPR025875 Leu-rich_rpt_4 467 504
IPR024788 Malectin-like_Carb-bd_dom 30 363
No external refs found!