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  5. Solyc12g011400.3.1

Solyc12g011400.3.1


Description : Pentatricopeptide repeat-containing protein At1g53600, mitochondrial OS=Arabidopsis thaliana (sp|q9c8l6|ppr80_arath : 791.0)


Gene families : OG0016348 (Archaeplastida) Phylogenetic Tree(s): OG0016348_tree ,
OG_05_0018260 (LandPlants) Phylogenetic Tree(s): OG_05_0018260_tree ,
OG_06_0006275 (SeedPlants) Phylogenetic Tree(s): OG_06_0006275_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g011400.3.1
Cluster HCCA: Cluster_75

Target Alias Description ECC score Gene Family Method Actions
Gb_27282 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.04 Archaeplastida
MA_102181g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.08 Archaeplastida
MA_140553g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005488 binding IEP Neighborhood
BP GO:0006777 Mo-molybdopterin cofactor biosynthetic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0019720 Mo-molybdopterin cofactor metabolic process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0043545 molybdopterin cofactor metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051189 prosthetic group metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 471 491
IPR002885 Pentatricopeptide_repeat 571 595
IPR002885 Pentatricopeptide_repeat 336 364
IPR002885 Pentatricopeptide_repeat 173 202
IPR002885 Pentatricopeptide_repeat 139 163
IPR002885 Pentatricopeptide_repeat 203 232
IPR002885 Pentatricopeptide_repeat 234 263
IPR002885 Pentatricopeptide_repeat 76 105
IPR002885 Pentatricopeptide_repeat 308 334
IPR002885 Pentatricopeptide_repeat 395 441
IPR002885 Pentatricopeptide_repeat 496 544
No external refs found!