1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g013840.3.1

Solyc12g013840.3.1


Description : protein kinase (PEK). regulator component SPA of COP1-SPA E3 ligase subcomplex


Gene families : OG0000790 (Archaeplastida) Phylogenetic Tree(s): OG0000790_tree ,
OG_05_0001763 (LandPlants) Phylogenetic Tree(s): OG_05_0001763_tree ,
OG_06_0005180 (SeedPlants) Phylogenetic Tree(s): OG_06_0005180_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g013840.3.1
Cluster HCCA: Cluster_147

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00068p00174010 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AT1G53090 SPA4 SPA1-related 4 0.11 Archaeplastida
AT2G46340 SPA1 SPA (suppressor of phyA-105) protein family 0.05 Archaeplastida
AT3G15354 SPA3 SPA1-related 3 0.13 Archaeplastida
Cpa|evm.model.tig00020964.35 No alias Protein modification.phosphorylation.PEK kinase 0.01 Archaeplastida
Cre02.g085050 No alias E3 ubiquitin-protein ligase COP1 OS=Arabidopsis thaliana 0.03 Archaeplastida
Cre13.g602700 No alias Protein modification.phosphorylation.PEK kinase 0.03 Archaeplastida
GSVIVT01007271001 No alias External stimuli response.light.red/far red... 0.04 Archaeplastida
GSVIVT01027054001 No alias External stimuli response.light.red/far red... 0.03 Archaeplastida
LOC_Os01g52640.3 No alias protein kinase (PEK) 0.1 Archaeplastida
LOC_Os02g53140.1 No alias protein kinase (PEK). component COP1 of COP1-SPA E3... 0.04 Archaeplastida
MA_10426100g0010 No alias protein kinase (PEK). regulator component SPA of... 0.03 Archaeplastida
Pp3c16_19410V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.08 Archaeplastida
Pp3c1_13190V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.06 Archaeplastida
Pp3c2_15860V3.1 No alias SPA1-related 3 0.08 Archaeplastida
Pp3c2_24290V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Pp3c5_26150V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.05 Archaeplastida
Pp3c6_5030V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Smo101888 No alias Protein modification.phosphorylation.PEK kinase 0.05 Archaeplastida
Smo141846 No alias External stimuli response.light.red/far red... 0.06 Archaeplastida
Smo171333 No alias External stimuli response.light.red/far red... 0.05 Archaeplastida
Smo98534 No alias External stimuli response.light.red/far red... 0.07 Archaeplastida
Zm00001e015983_P001 No alias protein kinase (PEK). component COP1 of COP1-SPA E3... 0.03 Archaeplastida
Zm00001e019928_P005 No alias protein kinase (PEK). regulator component SPA of... 0.08 Archaeplastida
Zm00001e023792_P001 No alias No annotation 0.05 Archaeplastida
Zm00001e028209_P002 No alias protein kinase (PEK). regulator component SPA of... 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003777 microtubule motor activity IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
MF GO:0015035 protein disulfide oxidoreductase activity IEP Neighborhood
MF GO:0015036 disulfide oxidoreductase activity IEP Neighborhood
BP GO:0015969 guanosine tetraphosphate metabolic process IEP Neighborhood
BP GO:0033865 nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP Neighborhood
BP GO:0042278 purine nucleoside metabolic process IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046128 purine ribonucleoside metabolic process IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:1901068 guanosine-containing compound metabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 730 765
IPR001680 WD40_repeat 645 681
No external refs found!