Solyc12g014540.2.1


Description : PHD finger protein At3g20280 OS=Arabidopsis thaliana (sp|q5pns0|y3228_arath : 129.0)


Gene families : OG0005039 (Archaeplastida) Phylogenetic Tree(s): OG0005039_tree ,
OG_05_0002653 (LandPlants) Phylogenetic Tree(s): OG_05_0002653_tree ,
OG_06_0004160 (SeedPlants) Phylogenetic Tree(s): OG_06_0004160_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g014540.2.1
Cluster HCCA: Cluster_127

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00013p00237850 evm_27.TU.AmTr_v1... PHD finger protein At3g20280 OS=Arabidopsis thaliana 0.03 Archaeplastida
AT1G50620 No alias RING/FYVE/PHD zinc finger superfamily protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
InterPro domains Description Start Stop
IPR019787 Znf_PHD-finger 382 429
IPR001025 BAH_dom 708 815
No external refs found!