1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g019220.1.1

Solyc12g019220.1.1


Description : Polygalacturonase OS=Prunus persica (sp|p48979|pglr_prupe : 489.0) & Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase(50.3.2 : 231.4)


Gene families : OG0000096 (Archaeplastida) Phylogenetic Tree(s): OG0000096_tree ,
OG_05_0001044 (LandPlants) Phylogenetic Tree(s): OG_05_0001044_tree ,
OG_06_0000479 (SeedPlants) Phylogenetic Tree(s): OG_06_0000479_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g019220.1.1
Cluster HCCA: Cluster_54

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00197210 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.07 Archaeplastida
AMTR_s00019p00250890 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.05 Archaeplastida
AMTR_s00096p00099360 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 Archaeplastida
AMTR_s00103p00121270 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and... 0.02 Archaeplastida
AT1G02460 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT1G05650 No alias Pectin lyase-like superfamily protein 0.14 Archaeplastida
AT1G05660 No alias Pectin lyase-like superfamily protein 0.13 Archaeplastida
AT1G60590 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
AT1G70500 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT1G80170 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT2G41850 ADPG2, PGAZAT polygalacturonase abscission zone A. thaliana 0.03 Archaeplastida
AT2G43880 No alias Pectin lyase-like superfamily protein 0.12 Archaeplastida
AT2G43890 No alias Pectin lyase-like superfamily protein 0.13 Archaeplastida
AT3G26610 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G57510 ADPG1 Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G59850 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT4G01890 No alias Pectin lyase-like superfamily protein 0.13 Archaeplastida
AT5G44830 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT5G44840 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01004007001 No alias Polygalacturonase OS=Prunus persica 0.02 Archaeplastida
GSVIVT01008062001 No alias Polygalacturonase OS=Juniperus ashei 0.03 Archaeplastida
GSVIVT01013771001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01013800001 No alias Cell wall.pectin.modification and... 0.05 Archaeplastida
GSVIVT01017644001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.08 Archaeplastida
GSVIVT01028132001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01028189001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01031298001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01032114001 No alias Polygalacturonase OS=Actinidia deliciosa 0.04 Archaeplastida
GSVIVT01032117001 No alias Cell wall.pectin.modification and... 0.05 Archaeplastida
GSVIVT01032118001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01032447001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana 0.05 Archaeplastida
GSVIVT01033303001 No alias Cell wall.pectin.modification and... 0.05 Archaeplastida
GSVIVT01033362001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01033364001 No alias Cell wall.pectin.modification and... 0.03 Archaeplastida
GSVIVT01038241001 No alias Polygalacturonase OS=Prunus persica 0.05 Archaeplastida
GSVIVT01038243001 No alias Polygalacturonase OS=Prunus persica 0.03 Archaeplastida
Gb_07774 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Gb_07779 No alias Polygalacturonase OS=Actinidia deliciosa... 0.05 Archaeplastida
Gb_12018 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
Gb_13356 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.02 Archaeplastida
LOC_Os01g19170.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os01g66710.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
LOC_Os03g11760.1 No alias Polygalacturonase OS=Actinidia deliciosa... 0.03 Archaeplastida
LOC_Os03g59330.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
LOC_Os05g46510.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os05g50260.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.01 Archaeplastida
LOC_Os11g14410.1 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
MA_10431579g0010 No alias Polygalacturonase OS=Cryptomeria japonica... 0.04 Archaeplastida
MA_127755g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_13282g0010 No alias Polygalacturonase OS=Actinidia deliciosa... 0.05 Archaeplastida
MA_640601g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9231294g0010 No alias No annotation 0.05 Archaeplastida
MA_925858g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp3g10720.1 No alias Polygalacturonase OS=Chamaecyparis obtusa... 0.03 Archaeplastida
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Pp3c23_3890V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Smo111266 No alias Polygalacturonase OS=Chamaecyparis obtusa 0.02 Archaeplastida
Smo78038 No alias Cell wall.pectin.modification and... 0.04 Archaeplastida
Solyc01g087280.2.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc01g100980.4.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc02g067630.3.1 No alias Polygalacturonase OS=Prunus persica... 0.07 Archaeplastida
Solyc02g067640.3.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc04g015530.3.1 No alias polygalacturonase (QRT2) 0.04 Archaeplastida
Solyc04g025440.3.1 No alias Probable polygalacturonase At1g80170 OS=Arabidopsis... 0.06 Archaeplastida
Solyc07g015870.4.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc08g014540.1.1 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
Solyc12g009420.3.1 No alias Polygalacturonase QRT2 OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc12g019120.2.1 No alias Polygalacturonase OS=Prunus persica... 0.06 Archaeplastida
Solyc12g019140.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g019180.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g096730.3.1 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Solyc12g096740.1.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Solyc12g096750.2.1 No alias Polygalacturonase OS=Prunus persica... 0.04 Archaeplastida
Zm00001e011814_P002 No alias Polygalacturonase OS=Actinidia deliciosa... 0.04 Archaeplastida
Zm00001e019002_P001 No alias Polygalacturonase OS=Prunus persica... 0.03 Archaeplastida
Zm00001e026240_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e027720_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Zm00001e036989_P001 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA Interproscan
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004097 catechol oxidase activity IEP Neighborhood
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP Neighborhood
MF GO:0004312 fatty acid synthase activity IEP Neighborhood
MF GO:0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity IEP Neighborhood
MF GO:0004499 N,N-dimethylaniline monooxygenase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004857 enzyme inhibitor activity IEP Neighborhood
MF GO:0005544 calcium-dependent phospholipid binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006629 lipid metabolic process IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008081 phosphoric diester hydrolase activity IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016679 oxidoreductase activity, acting on diphenols and related substances as donors IEP Neighborhood
MF GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
MF GO:0016892 endoribonuclease activity, producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0016894 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 3'-phosphomonoesters IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0030234 enzyme regulator activity IEP Neighborhood
BP GO:0030258 lipid modification IEP Neighborhood
BP GO:0030259 lipid glycosylation IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0033897 ribonuclease T2 activity IEP Neighborhood
MF GO:0043531 ADP binding IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
MF GO:0098772 molecular function regulator IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 57 381
No external refs found!