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  5. Solyc12g020110.2.1

Solyc12g020110.2.1


Description : chromatin remodeling factor (Rad5)


Gene families : OG0000572 (Archaeplastida) Phylogenetic Tree(s): OG0000572_tree ,
OG_05_0007064 (LandPlants) Phylogenetic Tree(s): OG_05_0007064_tree ,
OG_06_0007526 (SeedPlants) Phylogenetic Tree(s): OG_06_0007526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g020110.2.1
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AT3G20010 No alias SNF2 domain-containing protein / helicase... 0.03 Archaeplastida
AT5G05130 No alias DNA/RNA helicase protein 0.04 Archaeplastida
Cpa|evm.model.tig00021014.10 No alias DNA repair protein RAD5A OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01034370001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
Gb_33076 No alias chromatin remodeling factor (Ris1) 0.02 Archaeplastida
LOC_Os01g57110.1 No alias chromatin remodeling factor (Ris1) 0.03 Archaeplastida
LOC_Os08g08220.1 No alias chromatin remodeling factor (Rad5). chromatin remodeling... 0.04 Archaeplastida
MA_111652g0010 No alias chromatin remodeling factor (Rad5) 0.03 Archaeplastida
Pp3c24_8230V3.1 No alias DNA/RNA helicase protein 0.03 Archaeplastida
Zm00001e022169_P001 No alias chromatin remodeling factor (Rad5) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEA Interproscan
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004529 exodeoxyribonuclease activity IEP Neighborhood
MF GO:0004536 deoxyribonuclease activity IEP Neighborhood
BP GO:0006497 protein lipidation IEP Neighborhood
BP GO:0006505 GPI anchor metabolic process IEP Neighborhood
BP GO:0006506 GPI anchor biosynthetic process IEP Neighborhood
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Neighborhood
MF GO:0008297 single-stranded DNA exodeoxyribonuclease activity IEP Neighborhood
MF GO:0008409 5'-3' exonuclease activity IEP Neighborhood
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
CC GO:0030119 AP-type membrane coat adaptor complex IEP Neighborhood
CC GO:0030131 clathrin adaptor complex IEP Neighborhood
MF GO:0035312 5'-3' exodeoxyribonuclease activity IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
MF GO:0045145 single-stranded DNA 5'-3' exodeoxyribonuclease activity IEP Neighborhood
BP GO:0046474 glycerophospholipid biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000330 SNF2_N 214 597
IPR001650 Helicase_C 709 824
IPR018957 Znf_C3HC4_RING-type 639 677
IPR014905 HIRAN 40 132
No external refs found!