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  5. Solyc12g027550.2.1

Solyc12g027550.2.1


Description : Photosystem II CP43 reaction center protein OS=Nicotiana tabacum (sp|p06413|psbc_tobac : 98.2)


Gene families : OG0001539 (Archaeplastida) Phylogenetic Tree(s): OG0001539_tree ,
OG_05_0001136 (LandPlants) Phylogenetic Tree(s): OG_05_0001136_tree ,
OG_06_0000942 (SeedPlants) Phylogenetic Tree(s): OG_06_0000942_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g027550.2.1
Cluster HCCA: Cluster_16

Target Alias Description ECC score Gene Family Method Actions
AMTR_s01196p00010070 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein OS=Carica papaya 0.03 Archaeplastida
AMTR_s04036p00005710 evm_27.TU.AmTr_v1... Photosystem II CP43 reaction center protein... 0.03 Archaeplastida
ATCG00280 PSBC photosystem II reaction center protein C 0.03 Archaeplastida
GSVIVT01006662001 No alias Photosystem II CP43 reaction center protein OS=Platanus... 0.02 Archaeplastida
GSVIVT01027074001 No alias No description available 0.02 Archaeplastida
Gb_06826 No alias Photosystem II CP43 reaction center protein OS=Cycas... 0.01 Archaeplastida
Gb_09041 No alias component PsbD/D2 of PS-II reaction center complex 0.2 Archaeplastida
Gb_11943 No alias Photosystem II CP43 reaction center protein... 0.01 Archaeplastida
Gb_19153 No alias Photosystem II CP43 reaction center protein... 0.01 Archaeplastida
Gb_19166 No alias Photosystem II CP43 reaction center protein... 0.14 Archaeplastida
Gb_22672 No alias Photosystem II CP43 reaction center protein... 0.01 Archaeplastida
LOC_Os02g24632.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.05 Archaeplastida
LOC_Os04g16874.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.05 Archaeplastida
LOC_Os10g21212.1 No alias component PsbC/CP43 of PS-II reaction center complex 0.06 Archaeplastida
Smo137689 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.07 Archaeplastida
Solyc00g500054.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.03 Archaeplastida
Solyc00g500136.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.03 Archaeplastida
Solyc00g500206.1.1 No alias component PsbD/D2 of PS-II reaction center complex.... 0.03 Archaeplastida
Solyc07g009000.1.1 No alias Photosystem II CP43 reaction center protein OS=Coffea... 0.1 Archaeplastida
Zm00001e042042_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.08 Archaeplastida
Zm00001e042157_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.1 Archaeplastida
Zm00001e042172_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e042269_P001 No alias Photosystem II CP43 reaction center protein OS=Sorghum... 0.1 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEA Interproscan
BP GO:0009767 photosynthetic electron transport chain IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016168 chlorophyll binding IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0009055 electron transfer activity IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009772 photosynthetic electron transport in photosystem II IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000932 PS_antenna-like 1 59
No external refs found!