Description : DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum (sp|q2mij5|rpob_solbu : 432.0)
Gene families : OG0001479 (Archaeplastida) Phylogenetic Tree(s): OG0001479_tree ,
OG_05_0001081 (LandPlants) Phylogenetic Tree(s): OG_05_0001081_tree ,
OG_06_0001102 (SeedPlants) Phylogenetic Tree(s): OG_06_0001102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Solyc12g035870.3.1 | |
Cluster | HCCA: Cluster_5 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00102p00108130 | evm_27.TU.AmTr_v1... | DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda | 0.07 | Archaeplastida | |
AMTR_s00145p00090170 | evm_27.TU.AmTr_v1... | DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda | 0.05 | Archaeplastida | |
AMTR_s00626p00011520 | evm_27.TU.AmTr_v1... | DNA-directed RNA polymerase subunit beta OS=Morus indica | 0.07 | Archaeplastida | |
AMTR_s01499p00009870 | evm_27.TU.AmTr_v1... | DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda | 0.05 | Archaeplastida | |
ATCG00190 | RPOB | RNA polymerase subunit beta | 0.15 | Archaeplastida | |
Gb_02251 | No alias | RpoB core component plastid-encoded RNA polymerase | 0.07 | Archaeplastida | |
Gb_06830 | No alias | DNA-directed RNA polymerase subunit beta OS=Pinus... | 0.06 | Archaeplastida | |
Gb_09029 | No alias | DNA-directed RNA polymerase subunit beta OS=Cycas... | 0.09 | Archaeplastida | |
LOC_Os04g16820.1 | No alias | RpoB core component plastid-encoded RNA polymerase | 0.06 | Archaeplastida | |
LOC_Os05g22830.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Oryza sativa... | 0.12 | Archaeplastida | |
LOC_Os05g22860.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Oryza sativa... | 0.2 | Archaeplastida | |
Mp1g13170.1 | No alias | DNA-directed RNA polymerase subunit beta OS=Marchantia... | 0.04 | Archaeplastida | |
Mp6g01430.1 | No alias | no hits & (original description: none) | 0.09 | Archaeplastida | |
Mp6g21490.1 | No alias | no hits & (original description: none) | 0.1 | Archaeplastida | |
Zm00001e042040_P001 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida | |
Zm00001e042070_P001 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida | |
Zm00001e042106_P001 | No alias | no hits & (original description: none) | 0.06 | Archaeplastida | |
Zm00001e042170_P001 | No alias | no hits & (original description: none) | 0.02 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEA | Interproscan |
BP | GO:0006351 | transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
MF | GO:0003954 | NADH dehydrogenase activity | IEP | Neighborhood |
MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
MF | GO:0005524 | ATP binding | IEP | Neighborhood |
CC | GO:0005575 | cellular_component | IEP | Neighborhood |
CC | GO:0005840 | ribosome | IEP | Neighborhood |
BP | GO:0006412 | translation | IEP | Neighborhood |
BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
MF | GO:0008137 | NADH dehydrogenase (ubiquinone) activity | IEP | Neighborhood |
MF | GO:0008144 | drug binding | IEP | Neighborhood |
CC | GO:0009507 | chloroplast | IEP | Neighborhood |
CC | GO:0009521 | photosystem | IEP | Neighborhood |
CC | GO:0009522 | photosystem I | IEP | Neighborhood |
CC | GO:0009536 | plastid | IEP | Neighborhood |
CC | GO:0009579 | thylakoid | IEP | Neighborhood |
BP | GO:0015979 | photosynthesis | IEP | Neighborhood |
CC | GO:0016021 | integral component of membrane | IEP | Neighborhood |
MF | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor | IEP | Neighborhood |
MF | GO:0017076 | purine nucleotide binding | IEP | Neighborhood |
BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Neighborhood |
CC | GO:0031224 | intrinsic component of membrane | IEP | Neighborhood |
MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Neighborhood |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Neighborhood |
CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
CC | GO:0043226 | organelle | IEP | Neighborhood |
CC | GO:0043227 | membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Neighborhood |
CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
CC | GO:0044424 | intracellular part | IEP | Neighborhood |
CC | GO:0044425 | membrane part | IEP | Neighborhood |
CC | GO:0044436 | thylakoid part | IEP | Neighborhood |
CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
CC | GO:0044464 | cell part | IEP | Neighborhood |
MF | GO:0050136 | NADH dehydrogenase (quinone) activity | IEP | Neighborhood |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No external refs found! |