Solyc12g035870.3.1


Description : DNA-directed RNA polymerase subunit beta OS=Solanum bulbocastanum (sp|q2mij5|rpob_solbu : 432.0)


Gene families : OG0001479 (Archaeplastida) Phylogenetic Tree(s): OG0001479_tree ,
OG_05_0001081 (LandPlants) Phylogenetic Tree(s): OG_05_0001081_tree ,
OG_06_0001102 (SeedPlants) Phylogenetic Tree(s): OG_06_0001102_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g035870.3.1
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00102p00108130 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.07 Archaeplastida
AMTR_s00145p00090170 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.05 Archaeplastida
AMTR_s00626p00011520 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Morus indica 0.07 Archaeplastida
AMTR_s01499p00009870 evm_27.TU.AmTr_v1... DNA-directed RNA polymerase subunit beta OS=Amborella trichopoda 0.05 Archaeplastida
ATCG00190 RPOB RNA polymerase subunit beta 0.15 Archaeplastida
Gb_02251 No alias RpoB core component plastid-encoded RNA polymerase 0.07 Archaeplastida
Gb_06830 No alias DNA-directed RNA polymerase subunit beta OS=Pinus... 0.06 Archaeplastida
Gb_09029 No alias DNA-directed RNA polymerase subunit beta OS=Cycas... 0.09 Archaeplastida
LOC_Os04g16820.1 No alias RpoB core component plastid-encoded RNA polymerase 0.06 Archaeplastida
LOC_Os05g22830.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.12 Archaeplastida
LOC_Os05g22860.1 No alias DNA-directed RNA polymerase subunit beta OS=Oryza sativa... 0.2 Archaeplastida
Mp1g13170.1 No alias DNA-directed RNA polymerase subunit beta OS=Marchantia... 0.04 Archaeplastida
Mp6g01430.1 No alias no hits & (original description: none) 0.09 Archaeplastida
Mp6g21490.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Zm00001e042040_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e042070_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e042106_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e042170_P001 No alias no hits & (original description: none) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003954 NADH dehydrogenase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
CC GO:0016021 integral component of membrane IEP Neighborhood
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007120 DNA-dir_RNAP_su2_dom 127 227
IPR007120 DNA-dir_RNAP_su2_dom 2 55
IPR007641 RNA_pol_Rpb2_7 228 297
No external refs found!