Solyc12g039030.1.1


Description : Photosystem II protein D1 OS=Oltmannsiellopsis viridis (sp|q20et2|psba_oltvi : 102.0)


Gene families : OG0001158 (Archaeplastida) Phylogenetic Tree(s): OG0001158_tree ,
OG_05_0000799 (LandPlants) Phylogenetic Tree(s): OG_05_0000799_tree ,
OG_06_0022977 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g039030.1.1
Cluster HCCA: Cluster_93

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00270980 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 Archaeplastida
AMTR_s00071p00011330 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 Archaeplastida
AMTR_s00172p00027480 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.04 Archaeplastida
AMTR_s00172p00030370 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.04 Archaeplastida
AMTR_s00172p00038240 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.04 Archaeplastida
AMTR_s00172p00040120 No alias Photosystem II protein D1 OS=Amborella trichopoda 0.04 Archaeplastida
AMTR_s00390p00002060 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.04 Archaeplastida
ATCG00020 PSBA photosystem II reaction center protein A 0.07 Archaeplastida
GSVIVT01016441001 No alias Photosystem II protein D1 OS=Vitis vinifera 0.04 Archaeplastida
Gb_03955 No alias Photosystem II protein D1 OS=Cryptomeria japonica... 0.06 Archaeplastida
Gb_09035 No alias Photosystem II protein D1 OS=Cryptomeria japonica... 0.06 Archaeplastida
Gb_18604 No alias Photosystem II protein D1 OS=Adiantum capillus-veneris... 0.06 Archaeplastida
Gb_20129 No alias Photosystem II protein D1 OS=Zygnema circumcarinatum... 0.05 Archaeplastida
Gb_23102 No alias no description available(sp|q85bh5|psba_antag : 432.0) 0.03 Archaeplastida
Gb_26289 No alias no description available(sp|q85bh5|psba_antag : 489.0) 0.12 Archaeplastida
LOC_Os10g21192.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
LOC_Os10g39880.1 No alias Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.04 Archaeplastida
LOC_Os12g19580.1 No alias Photosystem II protein D1 OS=Oryza sativa subsp. indica... 0.08 Archaeplastida
Mp1g09910.1 No alias Photosystem II protein D1 OS=Chlorella ellipsoidea... 0.06 Archaeplastida
Mp3g12650.1 No alias Photosystem II protein D1 OS=Marchantia polymorpha... 0.06 Archaeplastida
Mp5g10950.1 No alias No annotation 0.05 Archaeplastida
Smo139195 No alias Photosystem II protein D1 OS=Phalaenopsis aphrodite... 0.09 Archaeplastida
Smo236852 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.1 Archaeplastida
Solyc00g500130.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
Solyc00g500200.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
Solyc00g500296.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
Solyc00g500329.1.1 No alias component PsbA/D1 of PS-II reaction center complex 0.08 Archaeplastida
Solyc05g016120.2.1 No alias no hits & (original description: none) 0.08 Archaeplastida
Zm00001e036844_P001 No alias Photosystem II protein D1 OS=Zea mays... 0.07 Archaeplastida
Zm00001e042113_P001 No alias Photosystem II protein D1 OS=Zea mays... 0.11 Archaeplastida
Zm00001e042176_P001 No alias component PsbA/D1 of PS-II reaction center complex 0.1 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0009772 photosynthetic electron transport in photosystem II IEA Interproscan
BP GO:0019684 photosynthesis, light reaction IEA Interproscan
MF GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0009521 photosystem IEP Neighborhood
CC GO:0009522 photosystem I IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
BP GO:0015979 photosynthesis IEP Neighborhood
MF GO:0016168 chlorophyll binding IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016984 ribulose-bisphosphate carboxylase activity IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000484 Photo_RC_L/M 1 53
No external refs found!