1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc12g040817.1.1

Solyc12g040817.1.1


Description : Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana (sp|q94hw2|polr1_arath : 119.0)


Gene families : OG0000100 (Archaeplastida) Phylogenetic Tree(s): OG0000100_tree ,
OG_05_0000036 (LandPlants) Phylogenetic Tree(s): OG_05_0000036_tree ,
OG_06_0000011 (SeedPlants) Phylogenetic Tree(s): OG_06_0000011_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g040817.1.1
Cluster HCCA: Cluster_87

Target Alias Description ECC score Gene Family Method Actions
Gb_03554 No alias Retrovirus-related Pol polyprotein from transposon RE2... 0.01 Archaeplastida
Solyc02g005608.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc02g062915.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.01 Archaeplastida
Solyc02g150117.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.01 Archaeplastida
Solyc04g005015.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc04g050573.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc04g056727.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc04g074195.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc04g150118.1.1 No alias No annotation 0.01 Archaeplastida
Solyc05g016717.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.01 Archaeplastida
Solyc05g150126.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc05g150143.1.1 No alias No annotation 0.01 Archaeplastida
Solyc06g006013.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc06g011407.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.03 Archaeplastida
Solyc07g015905.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.01 Archaeplastida
Solyc07g017605.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.04 Archaeplastida
Solyc07g043485.1.1 No alias No annotation 0.01 Archaeplastida
Solyc07g045455.1.1 No alias No annotation 0.01 Archaeplastida
Solyc08g041825.1.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc09g072757.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.01 Archaeplastida
Solyc09g150136.1.1 No alias no hits & (original description: none) 0.02 Archaeplastida
Solyc10g018197.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.01 Archaeplastida
Solyc10g019145.1.1 No alias No annotation 0.01 Archaeplastida
Solyc10g046935.1.1 No alias No annotation 0.01 Archaeplastida
Solyc10g049287.1.1 No alias No annotation 0.01 Archaeplastida
Solyc10g049365.1.1 No alias Retrovirus-related Pol polyprotein from transposon RE1... 0.02 Archaeplastida
Solyc10g049476.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc10g049755.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.02 Archaeplastida
Solyc10g074828.1.1 No alias no hits & (original description: none) 0.01 Archaeplastida
Solyc11g010815.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.01 Archaeplastida
Solyc11g032065.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.01 Archaeplastida
Solyc11g045338.1.1 No alias Uncharacterized mitochondrial protein AtMg00810... 0.03 Archaeplastida
Solyc11g063747.1.1 No alias No annotation 0.01 Archaeplastida
Solyc12g040875.1.1 No alias No annotation 0.01 Archaeplastida
Solyc12g042565.1.1 No alias No annotation 0.01 Archaeplastida
Solyc12g062207.1.1 No alias No annotation 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!