Solyc12g042590.2.1

Description : transcription factor (WRKY)

Gene families : OG0000007 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000005 (LandPlants) Phylogenetic Tree(s): OG_05_0000005_tree ,
OG_06_0002014 (SeedPlants) Phylogenetic Tree(s): OG_06_0002014_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Solyc12g042590.2.1
Cluster	HCCA: Cluster_29

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00003p00229970	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.WRKY...	0.02	Archaeplastida
AT1G64000	WRKY56, ATWRKY56	WRKY DNA-binding protein 56	0.02	Archaeplastida
AT5G24110	ATWRKY30, WRKY30	WRKY DNA-binding protein 30	0.02	Archaeplastida
AT5G41570	ATWRKY24, WRKY24	WRKY DNA-binding protein 24	0.02	Archaeplastida
GSVIVT01019419001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
GSVIVT01033195001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
GSVIVT01034968001	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.02	Archaeplastida
LOC_Os01g43550.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os01g54600.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os02g08440.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
LOC_Os03g55080.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os05g45230.1	No alias	transcription factor (WRKY)	0.06	Archaeplastida
LOC_Os05g46020.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os06g44010.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
LOC_Os12g02420.1	No alias	transcription factor (WRKY)	0.02	Archaeplastida
MA_10434450g0010	No alias	transcription factor (WRKY)	0.04	Archaeplastida
MA_126273g0010	No alias	transcription factor (WRKY)	0.03	Archaeplastida
MA_76002g0010	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Pp3c3_8830V3.1	No alias	WRKY DNA-binding protein 23	0.04	Archaeplastida
Pp3c4_15559V3.1	No alias	WRKY family transcription factor	0.02	Archaeplastida
Smo147026	No alias	RNA biosynthesis.transcriptional activation.WRKY...	0.03	Archaeplastida
Solyc02g071130.4.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc04g078550.3.1	No alias	transcription factor (WRKY)	0.03	Archaeplastida
Solyc06g066370.4.1	No alias	transcription factor (WRKY). transcription factor (WRKY33)	0.03	Archaeplastida
Solyc08g008280.3.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Solyc09g014990.4.1	No alias	transcription factor (WRKY). transcription factor (WRKY33)	0.05	Archaeplastida
Solyc10g007970.2.1	No alias	transcription factor (WRKY)	0.04	Archaeplastida
Zm00001e018502_P001	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Zm00001e025937_P001	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Zm00001e027804_P001	No alias	transcription factor (WRKY)	0.02	Archaeplastida
Zm00001e028832_P001	No alias	transcription factor (WRKY). transcription factor (WRKY33)	0.03	Archaeplastida
Zm00001e032260_P001	No alias	transcription factor (WRKY)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Neighborhood
MF	GO:0004470	malic enzyme activity	IEP	Neighborhood
MF	GO:0004471	malate dehydrogenase (decarboxylating) (NAD+) activity	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0004674	protein serine/threonine kinase activity	IEP	Neighborhood
MF	GO:0005543	phospholipid binding	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0006950	response to stress	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0008037	cell recognition	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016615	malate dehydrogenase activity	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0022414	reproductive process	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0048544	recognition of pollen	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
MF	GO:0051287	NAD binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003657	WRKY_dom	136	193

External Links

No external refs found!

Solyc12g042590.2.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation