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Description : component CASC3 of RNA quality control Exon Junction complex
Gene families : OG0004329 (Archaeplastida) Phylogenetic Tree(s): OG0004329_tree ,
OG_05_0003530 (LandPlants) Phylogenetic Tree(s): OG_05_0003530_tree ,
OG_06_0006568 (SeedPlants) Phylogenetic Tree(s): OG_06_0006568_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Solyc12g042990.3.1 | |
| Cluster | HCCA: Cluster_131 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT1G15280 | No alias | CASC3/Barentsz eIF4AIII binding | 0.09 | Archaeplastida | |
| GSVIVT01017130001 | No alias | RNA processing.RNA quality control Exon Junction complex... | 0.03 | Archaeplastida | |
| LOC_Os01g41190.2 | No alias | component CASC3 of RNA quality control Exon Junction complex | 0.03 | Archaeplastida | |
| MA_10431738g0010 | No alias | component CASC3 of RNA quality control Exon Junction complex | 0.04 | Archaeplastida | |
| Mp8g03760.1 | No alias | component CASC3 of RNA quality control Exon Junction complex | 0.03 | Archaeplastida | |
| Pp3c17_2620V3.1 | No alias | CASC3/Barentsz eIF4AIII binding | 0.05 | Archaeplastida | |
| Zm00001e027824_P002 | No alias | component CASC3 of RNA quality control Exon Junction complex | 0.05 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Neighborhood |
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003682 | chromatin binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0004484 | mRNA guanylyltransferase activity | IEP | Neighborhood |
| MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| CC | GO:0005694 | chromosome | IEP | Neighborhood |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
| BP | GO:0006325 | chromatin organization | IEP | Neighborhood |
| BP | GO:0006354 | DNA-templated transcription, elongation | IEP | Neighborhood |
| BP | GO:0006368 | transcription elongation from RNA polymerase II promoter | IEP | Neighborhood |
| BP | GO:0006370 | 7-methylguanosine mRNA capping | IEP | Neighborhood |
| BP | GO:0006396 | RNA processing | IEP | Neighborhood |
| BP | GO:0006397 | mRNA processing | IEP | Neighborhood |
| BP | GO:0006476 | protein deacetylation | IEP | Neighborhood |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| CC | GO:0008023 | transcription elongation factor complex | IEP | Neighborhood |
| MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Neighborhood |
| MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Neighborhood |
| BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| MF | GO:0010181 | FMN binding | IEP | Neighborhood |
| BP | GO:0016043 | cellular component organization | IEP | Neighborhood |
| BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
| BP | GO:0016071 | mRNA metabolic process | IEP | Neighborhood |
| BP | GO:0016569 | covalent chromatin modification | IEP | Neighborhood |
| BP | GO:0016570 | histone modification | IEP | Neighborhood |
| BP | GO:0016575 | histone deacetylation | IEP | Neighborhood |
| CC | GO:0016593 | Cdc73/Paf1 complex | IEP | Neighborhood |
| MF | GO:0016853 | isomerase activity | IEP | Neighborhood |
| MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
| MF | GO:0032553 | ribonucleotide binding | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0035601 | protein deacylation | IEP | Neighborhood |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Neighborhood |
| BP | GO:0036260 | RNA capping | IEP | Neighborhood |
| MF | GO:0043168 | anion binding | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
| BP | GO:0051276 | chromosome organization | IEP | Neighborhood |
| MF | GO:0070568 | guanylyltransferase activity | IEP | Neighborhood |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Neighborhood |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Neighborhood |
| BP | GO:0098732 | macromolecule deacylation | IEP | Neighborhood |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Neighborhood |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR018545 | Btz_dom | 139 | 228 |
| No external refs found! |