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  5. Solyc12g049310.2.1

Solyc12g049310.2.1


Description : ubiquitin-fold component ATG12 of autophagosome ATG12-ATG5 ATG8-PE-ligase E3 heterodimer


Gene families : OG0008257 (Archaeplastida) Phylogenetic Tree(s): OG0008257_tree ,
OG_05_0009637 (LandPlants) Phylogenetic Tree(s): OG_05_0009637_tree ,
OG_06_0011313 (SeedPlants) Phylogenetic Tree(s): OG_06_0011313_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g049310.2.1
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00226010 evm_27.TU.AmTr_v1... Vesicle trafficking.autophagosome formation.ATG8/ATG12... 0.02 Archaeplastida
AT1G54210 ATATG12, ATG12A, APG12 Ubiquitin-like superfamily protein 0.02 Archaeplastida
Cre12.g557000 No alias Vesicle trafficking.autophagosome formation.ATG8/ATG12... 0.01 Archaeplastida
Pp3c4_29920V3.1 No alias Ubiquitin-like superfamily protein 0.04 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEA Interproscan
CC GO:0005737 cytoplasm IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000439 transcription factor TFIIH core complex IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005743 mitochondrial inner membrane IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006406 mRNA export from nucleus IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
CC GO:0008541 proteasome regulatory particle, lid subcomplex IEP Neighborhood
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016093 polyprenol metabolic process IEP Neighborhood
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Neighborhood
CC GO:0016471 vacuolar proton-transporting V-type ATPase complex IEP Neighborhood
BP GO:0019348 dolichol metabolic process IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
CC GO:0030176 integral component of endoplasmic reticulum membrane IEP Neighborhood
CC GO:0031227 intrinsic component of endoplasmic reticulum membrane IEP Neighborhood
CC GO:0031966 mitochondrial membrane IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0033176 proton-transporting V-type ATPase complex IEP Neighborhood
BP GO:0043248 proteasome assembly IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0051028 mRNA transport IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
CC GO:0070469 respiratory chain IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007242 Atg12 7 90
No external refs found!