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  5. Solyc12g049330.2.1

Solyc12g049330.2.1


Description : RING-HC-class E3 ligase


Gene families : OG0005342 (Archaeplastida) Phylogenetic Tree(s): OG0005342_tree ,
OG_05_0006607 (LandPlants) Phylogenetic Tree(s): OG_05_0006607_tree ,
OG_06_0008823 (SeedPlants) Phylogenetic Tree(s): OG_06_0008823_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g049330.2.1
Cluster HCCA: Cluster_275

Target Alias Description ECC score Gene Family Method Actions
Mp1g27340.1 No alias RING-HC-class E3 ligase 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
BP GO:0006996 organelle organization IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Neighborhood
BP GO:0015693 magnesium ion transport IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035596 methylthiotransferase activity IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Neighborhood
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
InterPro domains Description Start Stop
IPR022170 GIDE 146 289
No external refs found!