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  5. Solyc12g055710.1.1

Solyc12g055710.1.1


Description : RING-H2-class E3 ligase


Gene families : OG0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000003 (LandPlants) Phylogenetic Tree(s): OG_05_0000003_tree ,
OG_06_0000056 (SeedPlants) Phylogenetic Tree(s): OG_06_0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Solyc12g055710.1.1
Cluster HCCA: Cluster_44

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00271850 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00002p00203540 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.08 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00044p00211560 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00075p00134690 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.09 Archaeplastida
AT1G63840 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT1G67856 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT1G74410 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT2G35910 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT2G42350 No alias RING/U-box superfamily protein 0.07 Archaeplastida
AT2G42360 No alias RING/U-box superfamily protein 0.05 Archaeplastida
AT2G44578 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT3G03550 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT3G05200 ATL6 RING/U-box superfamily protein 0.06 Archaeplastida
AT3G16720 ATL2, TL2 TOXICOS EN LEVADURA 2 0.08 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G11370 RHA1A RING-H2 finger A1A 0.04 Archaeplastida
AT4G15975 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G17245 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G33565 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT4G35480 RHA3B RING-H2 finger A3B 0.05 Archaeplastida
AT5G05280 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G06490 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT5G10380 ATRING1, RING1 RING/U-box superfamily protein 0.05 Archaeplastida
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.1 Archaeplastida
AT5G53110 No alias RING/U-box superfamily protein 0.06 Archaeplastida
AT5G66070 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Cre01.g051700 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01000015001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.11 Archaeplastida
GSVIVT01005189001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01007793001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01012019001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.06 Archaeplastida
GSVIVT01015682001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.11 Archaeplastida
GSVIVT01016564001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01019530001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01032684001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
GSVIVT01037142001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Gb_04642 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_04643 No alias RING-H2 finger protein ATL60 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_04644 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_04645 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Gb_05005 No alias E3 ubiquitin-protein ligase RHA1B OS=Arabidopsis... 0.03 Archaeplastida
Gb_28973 No alias Probable E3 ubiquitin-protein ligase RHA1A... 0.06 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
LOC_Os01g20910.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os01g53500.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g55110.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g08200.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os02g14990.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g35329.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g35440.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.11 Archaeplastida
LOC_Os02g45390.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os02g45710.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g45780.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os02g46100.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os03g05570.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
LOC_Os03g44636.1 No alias no hits & (original description: none) 0.07 Archaeplastida
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
LOC_Os04g49160.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os04g49550.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
LOC_Os04g49700.1 No alias E3 ubiquitin-protein ligase ATL4 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os05g29710.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os05g45060.1 No alias RING-H2 finger protein ATL68 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os06g06150.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.11 Archaeplastida
LOC_Os06g11450.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g12680.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os06g16060.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.05 Archaeplastida
LOC_Os06g34620.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os08g06090.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os08g38460.1 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
LOC_Os08g43670.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os08g44950.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os09g36500.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os12g02220.1 No alias no hits & (original description: none) 0.02 Archaeplastida
LOC_Os12g24490.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os12g42530.1 No alias no hits & (original description: none) 0.04 Archaeplastida
LOC_Os12g42540.1 No alias RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_10106144g0010 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
MA_10145129g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10208579g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.11 Archaeplastida
MA_10433358g0010 No alias no hits & (original description: none) 0.08 Archaeplastida
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
MA_114175g0010 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
MA_12363g0010 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
MA_1252g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_133839g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_26001g0020 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
MA_308999g0010 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_393170g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_465316g0010 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
MA_569551g0010 No alias no hits & (original description: none) 0.11 Archaeplastida
MA_61738g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_7120568g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_80729g0030 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
MA_8609304g0010 No alias no hits & (original description: none) 0.1 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.11 Archaeplastida
MA_9143538g0010 No alias no hits & (original description: none) 0.07 Archaeplastida
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Pp3c14_22300V3.1 No alias No annotation 0.02 Archaeplastida
Pp3c1_32230V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c1_9560V3.1 No alias TOXICOS EN LEVADURA 2 0.05 Archaeplastida
Pp3c20_12240V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c23_10580V3.1 No alias RING/U-box superfamily protein 0.03 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.04 Archaeplastida
Pp3c4_30240V3.1 No alias TOXICOS EN LEVADURA 2 0.02 Archaeplastida
Pp3c5_4170V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Smo96681 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 Archaeplastida
Solyc02g083400.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Solyc03g083460.3.1 No alias RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc03g114090.1.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc05g008640.1.1 No alias RHA2 signal transducer of abscisic acid perception 0.02 Archaeplastida
Solyc05g010175.1.1 No alias no hits & (original description: none) 0.05 Archaeplastida
Solyc09g075320.1.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc09g089890.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc10g008080.3.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Solyc10g011880.1.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc11g010330.3.1 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Solyc11g066510.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc12g087860.3.1 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e002272_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e003126_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e007956_P001 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
Zm00001e009017_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e009988_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e010029_P001 No alias ubiquitin protein ligase (XERICO) 0.03 Archaeplastida
Zm00001e010787_P001 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e013809_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e014302_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.08 Archaeplastida
Zm00001e014764_P001 No alias RING-H2 finger protein ATL72 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e015470_P001 No alias RING-H2-class E3 ligase 0.07 Archaeplastida
Zm00001e015495_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e015905_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e016092_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e016470_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e016474_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e017509_P001 No alias no hits & (original description: none) 0.05 Archaeplastida
Zm00001e017960_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e022538_P002 No alias NEP1-interacting protein-like 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e022781_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e023723_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e023832_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e024702_P002 No alias NEP1-interacting protein-like 1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e026193_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e031874_P001 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e032186_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e032838_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Zm00001e035560_P001 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Zm00001e037108_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e041409_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e041824_P001 No alias RING-H2-class E3 ligase 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004222 metalloendopeptidase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005516 calmodulin binding IEP Neighborhood
BP GO:0006082 organic acid metabolic process IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016407 acetyltransferase activity IEP Neighborhood
MF GO:0016410 N-acyltransferase activity IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0019752 carboxylic acid metabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043436 oxoacid metabolic process IEP Neighborhood
MF GO:0043565 sequence-specific DNA binding IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044421 extracellular region part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0051259 protein complex oligomerization IEP Neighborhood
BP GO:0051260 protein homooligomerization IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 92 135
No external refs found!